PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006198.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 309aa    MW: 33873.1 Da    PI: 9.3204
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006198.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.49.8e-33150206158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  Rmu_sc0006198.1_g000014.1 150 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHQHALNRVRGSGGRF 206
                                57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MPLNANCMSW NPSERQVSPP LSKDVSFKVE LPPQLHHDAK HLGLRVQPDP GSCTTHSIGQ  60
SQGQCLSSES GEDETRGKGV EGTMKPAFLS NLDLMPHPPQ VGYSNVVGQF HPYADPYYSG  120
FLTAYGPQAM PPMVGMVPPR VPLPLDLQED GPIYVNAKQY HGILRRRQSR AKLEAQNKLL  180
KARKPYLHES RHQHALNRVR GSGGRFLSKK ELQQYDQNPT SSLNDHVSGS INLHQKDTPE  240
RESHHSGSSD LVTSVASHSG ITSVSGTNAI FRQPDRRFSG GMPPHMSGAM QFSGGLMGSG  300
NQHCASFVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-37NF-YA family protein