PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006123.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 394aa MW: 44031.4 Da PI: 5.1694

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006123.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.3	6e-11	59	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n ++k+ + g +++++ Aa ++ a++k++g Rmu_sc0006123.1_g000003.1 59 SIYRGVTRHRWTGRYEAHLWDkTSWNDiQKKKGRQGAYDSEDAAAHTYDLAALKYWG 115 57*****************77779997777777*99***********98 PP
2	AP2	51.9	1.9e-16	158	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Rmu_sc0006123.1_g000003.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDVAAIEYRG 209 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDNPKPKRS RKTHKNSAEK CPDSGGRSSI 60 YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQGAYDSED AAAHTYDLAA LKYWGPETIL 120 NFPLETYTKE LDEMQKVSKE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF 180 GNKYLYLGTY NTQEEAAAAY DVAAIEYRGV NAVTNFDISN YIDKLKSVEP QDPPPNVAQE 240 QLEVKQEVHQ FQPQPQEQQE QQQEQILVSP NLQYPHVVPC IESSTTTMQD VMDPTNDHQF 300 QFNWNFLENL VPVPDIPLDN EPSELPDLFG DLGFEENFDL MFGGASDVNL SGLLDTEACG 360 VQAAVPGNLD DNGSSPPSPS PSSTTTSVSC NYSV

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDNPKPKRS RKTHKNSAEK CPDSGGRSSI  60
YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQGAYDSED AAAHTYDLAA LKYWGPETIL  120
NFPLETYTKE LDEMQKVSKE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY NTQEEAAAAY DVAAIEYRGV NAVTNFDISN YIDKLKSVEP QDPPPNVAQE  240
QLEVKQEVHQ FQPQPQEQQE QQQEQILVSP NLQYPHVVPC IESSTTTMQD VMDPTNDHQF  300
QFNWNFLENL VPVPDIPLDN EPSELPDLFG DLGFEENFDL MFGGASDVNL SGLLDTEACG  360
VQAAVPGNLD DNGSSPPSPS PSSTTTSVSC NYSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-104	AP2 family protein