PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005990.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 36574.4 Da PI: 4.5214 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.7e-15 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl Rmu_sc0005990.1_g000003.1 27 KGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYL 74 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++ Rmu_sc0005990.1_g000003.1 80 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 123 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MRKPEPSVVS STGKNNKNNS MSNKLRKGLW SPEEDEKLMR YMLNNGQGCW SDVARNAGLE 60 RCGKSCRLRW INYLRPDLKR GAFSPQEEDL IIHFHSLLGN RWSQIAARLP GRTDNEIKNF 120 WNSTIKKRLK VLSSSSSSTA SPNASDSSSD QPNNKDFFTT AGGGGGFMNI IPQSMMPIYG 180 DSSMQSTSLI NHMFDPFPMV EHGGYYNNGN PCTAQIGSSV GSGADDCGFE ENIEAFGNVN 240 IGVEEDIFVP PLESVSTTDQ DQNLKTETIF YDNNNYYSNS NNIIKGENMI GVGNYFEDDQ 300 DQGLTMGEWD LEDLMKDVSS FPFLDYQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-74 | MYB family protein |