PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005964.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 668aa MW: 76942.4 Da PI: 8.1231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005964.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.6e-26	37	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+Y+ + GFs+r++++ k+k++geit+r fvC keg r+++k++ r++rae rtgC+a+l +k+++ ++k+ vt++++ Rmu_sc0005964.1_g000004.1 37 DFYNRYGGKEGFSIRRESHAKNKKTGEITSRVFVCCKEGIRSKDKRD-YMIRKSRAEARTGCHAELCIKLNRkNNKFFVTDFVE 119 6*****************************************999.99****************999******* PP FAR1 84 eHnHela 90 eHnH+l+ Rmu_sc0005964.1_g000004.1 120 EHNHPLV 126 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MDNALGATNV NVENFDLELD WKPRKGMEFD SEQAAYDFYN RYGGKEGFSI RRESHAKNKK 60 TGEITSRVFV CCKEGIRSKD KRDYMIRKSR AEARTGCHAE LCIKLNRKNN KFFVTDFVEE 120 HNHPLVVKEC SHMLPSQRKV QDCQGIDIDL AHDSGIGVTS LYELMGKQAG GRDVVGYTKQ 180 DVKNYLRSKR QRSLEYGEAG YIMKYFSDQT LENPSFYHAM QLDSEEQITN LFWADAKMII 240 DYGQFGDVVS FVTTYKINKS NRPLAVFVGF NHHCETIIFG VALMYDETAD SFIWLFETFF 300 RAMSGKAPKT TMAKALRHVM PDAYHRLCKW HMMQNAIKHG SSFLTEDGGI TSILSRFMEN 360 IEEEDEFISA WDAMLDKYGA RDNTWLSSIF DLREKWGFLY VKRAWSAGIR STQLSENFNS 420 ALKKYLDSDH NLSEFFTHYE RMVADKRYKE LQAEYDMCFR LPILKMHVKM LYEARKVYTK 480 LIFEEFQDQF ESSLEASITD CVDVDGGKIY TVIRDGYSRE RQVKRDSDDI LSCALFYGVG 540 FIVQVRISAR YPQGVCQDHP CIKALTLPHR IQEASSPHAT PSGTRGAKPS LYPTRHKRHQ 600 ALTLPQRVQE APSPLTTQPS TRDQALQRVL EADAYTIPQQ VPKSLYTMPT DPHKSSTRVR 660 YPNGIIKG

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MDNALGATNV NVENFDLELD WKPRKGMEFD SEQAAYDFYN RYGGKEGFSI RRESHAKNKK  60
TGEITSRVFV CCKEGIRSKD KRDYMIRKSR AEARTGCHAE LCIKLNRKNN KFFVTDFVEE  120
HNHPLVVKEC SHMLPSQRKV QDCQGIDIDL AHDSGIGVTS LYELMGKQAG GRDVVGYTKQ  180
DVKNYLRSKR QRSLEYGEAG YIMKYFSDQT LENPSFYHAM QLDSEEQITN LFWADAKMII  240
DYGQFGDVVS FVTTYKINKS NRPLAVFVGF NHHCETIIFG VALMYDETAD SFIWLFETFF  300
RAMSGKAPKT TMAKALRHVM PDAYHRLCKW HMMQNAIKHG SSFLTEDGGI TSILSRFMEN  360
IEEEDEFISA WDAMLDKYGA RDNTWLSSIF DLREKWGFLY VKRAWSAGIR STQLSENFNS  420
ALKKYLDSDH NLSEFFTHYE RMVADKRYKE LQAEYDMCFR LPILKMHVKM LYEARKVYTK  480
LIFEEFQDQF ESSLEASITD CVDVDGGKIY TVIRDGYSRE RQVKRDSDDI LSCALFYGVG  540
FIVQVRISAR YPQGVCQDHP CIKALTLPHR IQEASSPHAT PSGTRGAKPS LYPTRHKRHQ  600
ALTLPQRVQE APSPLTTQPS TRDQALQRVL EADAYTIPQQ VPKSLYTMPT DPHKSSTRVR  660
YPNGIIKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein