PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005805.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18826.2 Da PI: 10.1379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.5e-20 | 62 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ +r++lg+f taeeAa a+++a+ +++g Rmu_sc0005805.1_g000005.1 62 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEEAALAYDQAAFRMRG 112 8********.**********....33236*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MVLASQHELP LNENDSQDMV ICQALNEAMA LNHSSVPETH QIPNHQSTSN GLKPVKNLGK 60 KHYRGVRRRP WGKYAAEIRD SARHGARVWL GTFNTAEEAA LAYDQAAFRM RGSKAILNFP 120 AEFVASLSIE RVQPSFSVPS NTSTTTEAPK ISESERNTTT TVKARHMQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 3e-32 | ERF family protein |