PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005712.1_g000027.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 614aa MW: 71596.4 Da PI: 7.7358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005712.1_g000027.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.1	3.7e-15	67	177	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerr...traetrtg 61 kfY+ Y++ +GFs+rk+k+ +k+++++++r++vCsk g++ + +k+ ++ r +rt+ Rmu_sc0005712.1_g000027.1 67 KFYKYYSHVAGFSTRKAKKDIHKTKKTVYRRQWVCSKAGRHMSVQKTkevggcgmkeapngdknkvsRK---RllsGMRISRTD 147 6**************************************99999999*******998643333...244478899* PP FAR1 62 Ckaklkvkkek.dgkwevtkleleHnHela 90 a+++v ++ ++ ++v+k++++HnH+la Rmu_sc0005712.1_g000027.1 148 FPAQFMVMWSNhQDLFYVSKFVTQHNHDLA 177 **999988879************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MDSSEEEGLR FTDYNYHNQV FSDEEEDEPL GFERGFGNVE LNGRNFKDIT YEDVKHLWFR 60 TIDEAEKFYK YYSHVAGFST RKAKKDIHKT KKTVYRRQWV CSKAGRHMSV QKTKEVGGCG 120 MKEAPNGDKN KVSRKRLLSG MRISRTDFPA QFMVMWSNHQ DLFYVSKFVT QHNHDLAIAP 180 EVHFLRSHRN VERHDIAQVE SLLQAHVSIS RAYEFLAQQS GGYHNMRFTE KDLYNKLRPK 240 NMKYDAEGDV ETAVRRMKAK GSTEKEFWFE YTIDKDRRLA NMFWRDHQSL LDYIAYGDVL 300 IVDSTYKTNK YSKPMVLFVG CNNHRATVVF GIALVCDEKE ETYDWVFNQF IDSMQQKRPL 360 SVITDGDEAM KNALERVMPQ TRHRLCAWHI GRNIGQNLNC EEVMEGIGQL MFALVTVPDW 420 ESRWQSLILN NGLENNAWVA SLYNKRDHWA EAYFRGHFFG VSSFLMLTLK FFYVGQYDRV 480 ERHWCVEYRG NNGNPEWFCS CKMFESDDIP CAHLFCVMKA ELVSNFPDCL ILKRWTRLVG 540 ETTLAPAISV MSNDKSAQSA RYAALLIQAA EACLNFSKSP ESFNDAMIQL QTFKAKSMEL 600 RIPTFLSLQT VPQL

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MDSSEEEGLR FTDYNYHNQV FSDEEEDEPL GFERGFGNVE LNGRNFKDIT YEDVKHLWFR  60
TIDEAEKFYK YYSHVAGFST RKAKKDIHKT KKTVYRRQWV CSKAGRHMSV QKTKEVGGCG  120
MKEAPNGDKN KVSRKRLLSG MRISRTDFPA QFMVMWSNHQ DLFYVSKFVT QHNHDLAIAP  180
EVHFLRSHRN VERHDIAQVE SLLQAHVSIS RAYEFLAQQS GGYHNMRFTE KDLYNKLRPK  240
NMKYDAEGDV ETAVRRMKAK GSTEKEFWFE YTIDKDRRLA NMFWRDHQSL LDYIAYGDVL  300
IVDSTYKTNK YSKPMVLFVG CNNHRATVVF GIALVCDEKE ETYDWVFNQF IDSMQQKRPL  360
SVITDGDEAM KNALERVMPQ TRHRLCAWHI GRNIGQNLNC EEVMEGIGQL MFALVTVPDW  420
ESRWQSLILN NGLENNAWVA SLYNKRDHWA EAYFRGHFFG VSSFLMLTLK FFYVGQYDRV  480
ERHWCVEYRG NNGNPEWFCS CKMFESDDIP CAHLFCVMKA ELVSNFPDCL ILKRWTRLVG  540
ETTLAPAISV MSNDKSAQSA RYAALLIQAA EACLNFSKSP ESFNDAMIQL QTFKAKSMEL  600
RIPTFLSLQT VPQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-54	FAR1 family protein