PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005685.1_g000027.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 574aa MW: 66401.5 Da PI: 8.7117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005685.1_g000027.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.8	7e-08	12	53	50	90
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ke++ r ++gCka++ v ++k +g++ ++ +++ HnH+l+ Rmu_sc0005685.1_g000027.1 12 KEKNVRGLPKVGCKARIAVMRKKeSGRYAISVFVEGHNHPLT 53 567778889********99998**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MFVISKEIPK FKEKNVRGLP KVGCKARIAV MRKKESGRYA ISVFVEGHNH PLTSPPRVHL 60 LKSHRRVSEV NTVLSQQLSL VNVEKHKQFE FFGVQAGGIP NIGFIQRDLY NYGRTCREEK 120 KGHDGDLLYM HFQNEKEKDS SFVYTMESDE ENRVTRCFWV DSISRRAYSF YGDVVIFDTT 180 YNTNWYGMIF APFTGVNNHG QTIIFACAFL NDETADTFVW LFKEFLNAMP GAAPENAPKM 240 IITDQDLAMT KAISEALPQT FHRYCSWHIL HKFSKKLDAI KYRDSYQDFH SYIWNSSSRE 300 EFDSRWIEII EKSGLSDNKW LESIYEIRSS WIPAYVNHFK RRLLHQRHSE LEEDYINIDE 360 KAKMVMSLDI EDHMAKKSDF ASFSCRKFDS EGLPCRHVLA YLIKIQDVDK LPIQYILKRW 420 TKAERQRVVL DSNGIEVKDN KALLARRTKL FQHATYAIDK VMENFKPLIS HESGQSAVGL 480 ETETKTATIQ HVFNEPDQVR GKGCGRRLKK GKEKRKVKVK ASQGRQCHGC GLFGQSHEKR 540 NCPTLHGRPA INEDEDSSST SMDEDSCSSS HLVE

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MFVISKEIPK FKEKNVRGLP KVGCKARIAV MRKKESGRYA ISVFVEGHNH PLTSPPRVHL  60
LKSHRRVSEV NTVLSQQLSL VNVEKHKQFE FFGVQAGGIP NIGFIQRDLY NYGRTCREEK  120
KGHDGDLLYM HFQNEKEKDS SFVYTMESDE ENRVTRCFWV DSISRRAYSF YGDVVIFDTT  180
YNTNWYGMIF APFTGVNNHG QTIIFACAFL NDETADTFVW LFKEFLNAMP GAAPENAPKM  240
IITDQDLAMT KAISEALPQT FHRYCSWHIL HKFSKKLDAI KYRDSYQDFH SYIWNSSSRE  300
EFDSRWIEII EKSGLSDNKW LESIYEIRSS WIPAYVNHFK RRLLHQRHSE LEEDYINIDE  360
KAKMVMSLDI EDHMAKKSDF ASFSCRKFDS EGLPCRHVLA YLIKIQDVDK LPIQYILKRW  420
TKAERQRVVL DSNGIEVKDN KALLARRTKL FQHATYAIDK VMENFKPLIS HESGQSAVGL  480
ETETKTATIQ HVFNEPDQVR GKGCGRRLKK GKEKRKVKVK ASQGRQCHGC GLFGQSHEKR  540
NCPTLHGRPA INEDEDSSST SMDEDSCSSS HLVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1 family protein