PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005621.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25726.7 Da PI: 5.4325 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 102 | 153 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr+++ g+W+AeIrdp+ r r++lg+f taeeAa+a++ a+ +++ge Rmu_sc0005621.1_g000003.1 102 SKYRGVRQRP-GGKWAAEIRDPR----RaVRVWLGTFQTAEEAARAYDTAAIEFRGE 153 89********.9*********82....48*************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MESSGTKMPS HSGGLPKEQE HAIIVSALKQ VVRGGTTQPP PPQLHYASSS LPPTGGTDQV 60 VIPFSDCDAC QVCNMKMDDC LGCGLFRPSE QDEGKGKKMK TSKYRGVRQR PGGKWAAEIR 120 DPRRAVRVWL GTFQTAEEAA RAYDTAAIEF RGERAKLNFP LSSEAGTTTT GAALTRQSME 180 TGEVNQVTAS SVKSANQEEG QSSDVKDEDI DRFVWEMLKN DDGGEDLSTR VNSNLLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-27 | ERF family protein |