PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005607.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 888aa MW: 101932 Da PI: 8.131

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005607.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.7	1.3e-25	91	199	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkakl 66 +fY+eYAk++GF ++++s++s+ +g++++++f Cs++g++ e++k+ ++ r +r+ ++t+Cka++ Rmu_sc0005607.1_g000012.1 91 SFYKEYAKSMGFAAVIKASRRSRASGKFIDAKFGCSRYGTKPETSKAqtaepgsysressiclkrKRGGRASRSLEKTDCKACM 174 5**************************************9999999**********988788899********* PP FAR1 67 kvkkekdgkwevtkleleHnHelap 91 +vk+++dg+w v +l +eHnHe++p Rmu_sc0005607.1_g000012.1 175 HVKRRQDGRWTVCTLIKEHNHEIFP 199 ********************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MRIDLEQPSG ESHKADNGPS GREEDTSGDR AIVSVTNVPV NDKENTGKNV NGSVSNSKNR 60 VDVRDEINLN APKDSELHDG LEFESKEEAF SFYKEYAKSM GFAAVIKASR RSRASGKFID 120 AKFGCSRYGT KPETSKAQTA EPGSYSRESS ICLKRKRGGR ASRSLEKTDC KACMHVKRRQ 180 DGRWTVCTLI KEHNHEIFPD EAYFFRGHRK LDLSSGNVDG IHAIRRRTKN MFANMSRHSG 240 GYKKSSNQKG GGKNQSPSLQ HLSLEEGDAQ VMLDHFLCMQ DENPNFFYAI DLNEEQRLRN 300 VFWVDAKGRL DYGNFSDVVF LDTTYIKNEY KLPFAPFIGV NHHLQFILLG CALLADESKS 360 NYVWLMRAWL KAMGGRAPRV ILTDQDKFLK EAIAEVFPDS RHCFCLWHIL GKIHEKLGYV 420 IRQHDQFMEK FNKCIFKSWT NEQVEIRWFK MVDRFNLRND IWLQSLYEDR RQWIPAYLRD 480 IFLAGMSTTQ RSESINCFFD KYMQRRTTLK EFFEQYNTIL REKYEEEAKA DFETWHKQPA 540 LKSPSPFGKQ MATVYTHAIF KKFQVEVLGV VACHPKKEAE DGGIKTFRVQ DFEENQHFIV 600 EWNEMTSDMS CLCHSFEFNG FLCRHVLIVL QISGVHNIPS QYILKRWTKD AKSRETRGVG 660 SSSVESRAQR YNDLCRRAFE LGDEGSLSQE SYNIAFMALE EALRNCENIN NSIQSVIEPV 720 SPEAHGPHSF EGMNQGNSTN KTNKKNITSK KGQVHSEPEV LTIEMQESWQ GMEQLSSRAP 780 TLDGYIGPQQ IVQGMGPLNT VSSRRDNYYS NQHMQGLGQL NSITPIQDAQ YITQQRLHGV 840 GQLHFRPRTI PSFVIEDDLQ DMDQSTVGRT QIHGLASNHL QSKHPSRQ

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MRIDLEQPSG ESHKADNGPS GREEDTSGDR AIVSVTNVPV NDKENTGKNV NGSVSNSKNR  60
VDVRDEINLN APKDSELHDG LEFESKEEAF SFYKEYAKSM GFAAVIKASR RSRASGKFID  120
AKFGCSRYGT KPETSKAQTA EPGSYSRESS ICLKRKRGGR ASRSLEKTDC KACMHVKRRQ  180
DGRWTVCTLI KEHNHEIFPD EAYFFRGHRK LDLSSGNVDG IHAIRRRTKN MFANMSRHSG  240
GYKKSSNQKG GGKNQSPSLQ HLSLEEGDAQ VMLDHFLCMQ DENPNFFYAI DLNEEQRLRN  300
VFWVDAKGRL DYGNFSDVVF LDTTYIKNEY KLPFAPFIGV NHHLQFILLG CALLADESKS  360
NYVWLMRAWL KAMGGRAPRV ILTDQDKFLK EAIAEVFPDS RHCFCLWHIL GKIHEKLGYV  420
IRQHDQFMEK FNKCIFKSWT NEQVEIRWFK MVDRFNLRND IWLQSLYEDR RQWIPAYLRD  480
IFLAGMSTTQ RSESINCFFD KYMQRRTTLK EFFEQYNTIL REKYEEEAKA DFETWHKQPA  540
LKSPSPFGKQ MATVYTHAIF KKFQVEVLGV VACHPKKEAE DGGIKTFRVQ DFEENQHFIV  600
EWNEMTSDMS CLCHSFEFNG FLCRHVLIVL QISGVHNIPS QYILKRWTKD AKSRETRGVG  660
SSSVESRAQR YNDLCRRAFE LGDEGSLSQE SYNIAFMALE EALRNCENIN NSIQSVIEPV  720
SPEAHGPHSF EGMNQGNSTN KTNKKNITSK KGQVHSEPEV LTIEMQESWQ GMEQLSSRAP  780
TLDGYIGPQQ IVQGMGPLNT VSSRRDNYYS NQHMQGLGQL NSITPIQDAQ YITQQRLHGV  840
GQLHFRPRTI PSFVIEDDLQ DMDQSTVGRT QIHGLASNHL QSKHPSRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein