PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005594.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 233aa    MW: 24580 Da    PI: 4.778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005594.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-1562110255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+G+r ++ +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++ a+ +l+g
  Rmu_sc0005594.1_g000003.1  62 LYRGIR-CR-SGKWVSEIREPRK---SNRIWLGTYAKPEMAAAAYDVAAIALKG 110
                                69***9.55.6*********954...49**********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MADPYGNVPK SDDQPSNSNP PFFIQLPPTS SSSDVNDQQH HDLLGLRSPT GGSISSPGRH  60
PLYRGIRCRS GKWVSEIREP RKSNRIWLGT YAKPEMAAAA YDVAAIALKG PDTALNFPNA  120
LITYPIPASS AASDIRAAAA RAAASRAENI KPGESSSGGA AGRVENVHRS GGGRGTGVTS  180
DDDGGCQEFM DEEALWNMPN LLADMAEGML VSPPRDPADD SPGNSDGESL WSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-40ERF family protein