PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005570.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 326aa    MW: 37646.6 Da    PI: 10.4581
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005570.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201562249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +ien++n qvtfskRr+g++KKA+EL++L +ae a+++fs+  k y +
  Rmu_sc0005570.1_g000010.1 15 KIENETNLQVTFSKRRTGLFKKASELCTLSGAEMAIVVFSPGKKPYSF 62
                               69**************************************98887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MPRISRGRRK IAMRKIENET NLQVTFSKRR TGLFKKASEL CTLSGAEMAI VVFSPGKKPY  60
SFGHPNVDSI IERYLSGSHQ PLNNSSTAQA ARLIEEANRN ATLSRLNEEL ALLNEMRDEE  120
LRKGEELLLR ERAGQHLHWQ EKPKEELDMQ QLMWLKMEMQ ELHRRVAQET QFRQQLALFD  180
TTNNLMNEQQ FTNPMAPFFA GIPSTSSQGA MNNDATISPH RHHKSDPSPN LTTNMHRRQP  240
PHVTTKVATP LHSLIPRFPV ADSHHHYLQF KHQALESQNK NHSLQSQRRT TLYKHRRRSQ  300
LCMPSFSDLR TSDSDQSGHT GFTLHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-41M-type_MADS family protein