PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005523.1_g000015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17626.5 Da PI: 9.5993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Rmu_sc0005523.1_g000015.1 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 84 69*****99.**********9...336*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MEGEYSCSSS SSSSTTSLEK RKKRQHEHDD NQEKPYRGIR MRKWGKWVAE IREPNKRSRI 60 WLGSYTTPVA AARAYDTAVF YLRGPSARLN FPELVFQEGQ LHDMSSASIR KKATEVGAKV 120 DAVQTALRSP SSQSKTGSQI KPDLNEYPDP ENSDDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 46 | KRKKRQHEHDDNQEKPYRGIRMRKWGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 1e-54 | ERF family protein |