PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005507.1_g000039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28261.5 Da PI: 4.8715 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.4 | 2e-22 | 78 | 163 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fY eYAk++GF +k + ++sk ++e +++++ C++ g++++++ + ++r+ +++Cka+l+vk+++dgkw+v+++++e Rmu_sc0005507.1_g000039.1 78 SFYLEYAKMTGFAASKIACRRSKVTKEWVEAKYACTRFGTKRKNDAR-----NPRPYMKIDCKAMLHVKRRQDGKWVVQNFVKE 156 59*************************************99987655.....******************************** PP FAR1 85 HnHelap 91 Hn el+p Rmu_sc0005507.1_g000039.1 157 HNYELSP 163 ****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGLEIDINLA AEEDDNYNED DMDDDNYNED GMNDDNYNED GVGEECGHSN GGESSINMKK 60 NSKPYVGMDF DSDGIAQSFY LEYAKMTGFA ASKIACRRSK VTKEWVEAKY ACTRFGTKRK 120 NDARNPRPYM KIDCKAMLHV KRRQDGKWVV QNFVKEHNYE LSPEDVHYFP CYRNIAFGDL 180 NNISTLYSVG VKPSKIFAAS AKQCGGYQNI GFLQKDMRNF LDKKRQLELE SGDAKAMLEH 240 FISMQED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-45 | FAR1 family protein |