PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005399.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 414aa    MW: 47615.2 Da    PI: 8.6253
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005399.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.88e-091161153
                       FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53
                               +fY++Y+  +GF  rk+++++   +g i +r++ C+k+g+r+++ k+ +ke++
  Rmu_sc0005399.1_g000009.1 11 RFYSTYSLALGFGFRKDTKREA--EGMIRRRQWLCNKQGTRAKKWKEIRKENQ 61
                               5****************98877..999****************9998333322 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MTFKTVEEAE RFYSTYSLAL GFGFRKDTKR EAEGMIRRRQ WLCNKQGTRA KKWKEIRKEN  60
QATLRQGPEY FEDGHRVYTM SAYKRPDFEH KVVYYHGKNT ESATDLIMVY SCNMFQYRGV  120
PCRHMFTVMK HEHINEIPKS LIVKRWSKSA RDVCSIKYPE QDISKEALEV SRYGAMSVDC  180
NRMCFYASKS EAGYNMLKRE INRLTTIMEG LLRGCEQVQS IATPKSKGCV LRDPITAKTK  240
GREAKSDKKK EKEAEKRGGK EDEKTGGEGS NTPWNATPAK RSIHCSRCKG IIGPFTVVCK  300
MSSLEETTPI VNWDQKKPSL DIAGSLMVPA LDEKHKHIYD EYEKEDDSKP IHAHTCSAVE  360
EGFCIHITDV TKRPYDTCAH LYNVSPDNKK RCSCILCHWE EEQEENANSP PSGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-08FAR1 family protein