PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005366.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 837aa MW: 91790.6 Da PI: 7.7896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005366.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.4e-16	646	692	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Rmu_sc0005366.1_g000001.1 646 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 692 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MAMHVSSAGF SIFSHRRVNR VRAVASENVS IEEQKVKLGA SDLKVTKLGI GAWSWGDTSY 60 WNNFEWDDRK MKAAKNAFDA SIDGGITFFD TAEVYGSRAS FGYLDGLGDA VEQGLVKAVG 120 VSNYREKRLR DAYEKLKKRG IPLASNQVNY SLIYRAPEEN GVKATCDELG ITLIAYSPIA 180 QGVLTGKYTP ENIPTGPRGQ IYTRDFITKL QPLLNRIKEI GEKYSKTPTQ VALNWLITQD 240 NVVPIPGAKN AEQAMEFAGA LGWKLNDDEV TELRSLASEI KPLKRSQSCA LIGTSVCSDM 300 NSCIPDWNFE GDLPLTNQKK PLGPDHELVE LLWRNGQVVL HSQTNRKPGP NPNESRQVQK 360 HDQIRVGGFY GNSGNLIHDE DAVSMIQYPI EDSFDKEFSH FFSELPSCDS LEIEKPIKQF 420 GEEKFVKFDA SSTTHLVSSS PQPNVKSSTG VAYPENPMPP PRFQISNPTD KNQNLGGLGK 480 IVNFSQFSTL GKGVVGSSRK QLGGKDPGKL NQAEVRECSM MTVGSSYSGS NQVPNDFDVS 540 RASSNGDGTT GFSTGPLYNN VQKMMPLSEG GMTETLDPTL TSSSGGSGSS FGRGGKQSNV 600 VNSNKRKGRD AEDSECQSEA AEIESAAGNK PAQRSGSSRR TRAAEVHNLS ERRRRDRINE 660 KMKALQELIP HSNKTDKASM LDEAIEYLKS LQLQLQVMWM GGGMAPMMFP GVQHYMSRMG 720 MGMGPPAMPS MHNLMQLPRV PLVDQCMTVT PPTNQAVMCQ TPVLNPVDYH NQMQNPSIQE 780 QYARLMGFHH MQTMSQPMNM FRFGSQPLPQ SQMMAPTGMN TGPLSGGAAT NDALSGK

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MAMHVSSAGF SIFSHRRVNR VRAVASENVS IEEQKVKLGA SDLKVTKLGI GAWSWGDTSY  60
WNNFEWDDRK MKAAKNAFDA SIDGGITFFD TAEVYGSRAS FGYLDGLGDA VEQGLVKAVG  120
VSNYREKRLR DAYEKLKKRG IPLASNQVNY SLIYRAPEEN GVKATCDELG ITLIAYSPIA  180
QGVLTGKYTP ENIPTGPRGQ IYTRDFITKL QPLLNRIKEI GEKYSKTPTQ VALNWLITQD  240
NVVPIPGAKN AEQAMEFAGA LGWKLNDDEV TELRSLASEI KPLKRSQSCA LIGTSVCSDM  300
NSCIPDWNFE GDLPLTNQKK PLGPDHELVE LLWRNGQVVL HSQTNRKPGP NPNESRQVQK  360
HDQIRVGGFY GNSGNLIHDE DAVSMIQYPI EDSFDKEFSH FFSELPSCDS LEIEKPIKQF  420
GEEKFVKFDA SSTTHLVSSS PQPNVKSSTG VAYPENPMPP PRFQISNPTD KNQNLGGLGK  480
IVNFSQFSTL GKGVVGSSRK QLGGKDPGKL NQAEVRECSM MTVGSSYSGS NQVPNDFDVS  540
RASSNGDGTT GFSTGPLYNN VQKMMPLSEG GMTETLDPTL TSSSGGSGSS FGRGGKQSNV  600
VNSNKRKGRD AEDSECQSEA AEIESAAGNK PAQRSGSSRR TRAAEVHNLS ERRRRDRINE  660
KMKALQELIP HSNKTDKASM LDEAIEYLKS LQLQLQVMWM GGGMAPMMFP GVQHYMSRMG  720
MGMGPPAMPS MHNLMQLPRV PLVDQCMTVT PPTNQAVMCQ TPVLNPVDYH NQMQNPSIQE  780
QYARLMGFHH MQTMSQPMNM FRFGSQPLPQ SQMMAPTGMN TGPLSGGAAT NDALSGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	651	656	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	3e-38	bHLH family protein