PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005230.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24541.4 Da    PI: 5.681
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005230.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.2e-151057249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +i+nk     tfskRr+g++ KA+E + L +ae+a+++fs+ +++y +
  Rmu_sc0005230.1_g000008.1 10 KISNKNYLMATFSKRRKGLFHKASEFCRLSGAEIAIVVFSPGDRVYRF 57
                               7999999**************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MGRRKIEIEK ISNKNYLMAT FSKRRKGLFH KASEFCRLSG AEIAIVVFSP GDRVYRFGHP  60
SADSIIDRYD DPLTENNNNK GTREFPYTLD DEGNEAHDDD LAGSKLGKEA ADGKDELGKA  120
RFWWDNLPIE DMGLKQLEQY KSCLEVIRNE LAYELHETKR RESHTKDFLS LIGFSTRTST  180
SDPVRERNCD IVEEHQAQIS WSSMTSAINP NFTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-32M-type_MADS family protein