PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005124.1_g000024.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 550aa MW: 60866.8 Da PI: 5.5047

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005124.1_g000024.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.2e-30	262	321	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Rmu_sc0005124.1_g000024.1 262 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 321 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MGISRENDQN DLEIGLSLKI DHPPKKEEEE EDGNDDEDEV HEDIEEESAA EEEEIKEDNI 60 EEEPKAAAGE VDDDASVVLE TTNLHENNLK TDQELCALQM EMSRMKEENN VLRKVVEQTM 120 KDYYDLQMKF TAVHQNSQTK DPQTFLSLRG NDHDEADPPK SSIPKMSEIR CHRSTSPARE 180 DDIIKESQLG LSLRLQTNEF RDQREDHDIQ ERNKEELTSS SLTSSVQHKL QRTDLAGITS 240 HAAQANRKAR VSVRARCESA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV 300 QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASAAAASF MLLDSSNHHL SDGTLPSSNF 360 MTQASLPPNN YYNTPHHMLN NLYPSSISHQ YSSSSNFRTL NSVHHQPHHD PSKGIVLDLT 420 NNFSDTSTST AIASAGSSSH SSAPLGFNNW MGGKPANYHH NAVNSTMIMG NHHLLSNSRR 480 TSGEESMTSS SALMAENVSA IASDPKFRVA VAAAITSLIN SKENNTTHHP TPPHNNNNFG 540 PRDNGEKGGS

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MGISRENDQN DLEIGLSLKI DHPPKKEEEE EDGNDDEDEV HEDIEEESAA EEEEIKEDNI  60
EEEPKAAAGE VDDDASVVLE TTNLHENNLK TDQELCALQM EMSRMKEENN VLRKVVEQTM  120
KDYYDLQMKF TAVHQNSQTK DPQTFLSLRG NDHDEADPPK SSIPKMSEIR CHRSTSPARE  180
DDIIKESQLG LSLRLQTNEF RDQREDHDIQ ERNKEELTSS SLTSSVQHKL QRTDLAGITS  240
HAAQANRKAR VSVRARCESA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV  300
QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASAAAASF MLLDSSNHHL SDGTLPSSNF  360
MTQASLPPNN YYNTPHHMLN NLYPSSISHQ YSSSSNFRTL NSVHHQPHHD PSKGIVLDLT  420
NNFSDTSTST AIASAGSSSH SSAPLGFNNW MGGKPANYHH NAVNSTMIMG NHHLLSNSRR  480
TSGEESMTSS SALMAENVSA IASDPKFRVA VAAAITSLIN SKENNTTHHP TPPHNNNNFG  540
PRDNGEKGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-71	WRKY family protein