PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005122.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 425aa MW: 48209.7 Da PI: 8.8648

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005122.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	84	123	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l Rmu_sc0005122.1_g000007.1 84 EDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 123 9**********************.***********97 PP
2	Myb_DNA-binding	33.2	1.3e-10	129	162	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 r +WT eE+++l++ +k +G++ W+ Ia+ ++ gR Rmu_sc0005122.1_g000007.1 129 RTAWTNEEEKILIESHKAYGNK-WAEIAKLLP-GRE 162 679*****************.*******.996 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MVQVKECDPN MEKGVLLSLS PPVSDSSGDN TALKPASAQL FENDRPYEMI SKGRLDRGRA 60 ECVRGRTDVQ CLHRWQKVLS PDLEDDLIIE LVAKQGNKKW SEIAKSLPGR IGKQCRERWH 120 NHLNPDIKRT AWTNEEEKIL IESHKAYGNK WAEIAKLLPG REIQIKSLDK GNRGWLTKGV 180 GADNMIKSPP SNLYYDRAAA ACGLNIEQRE EIYHNYGRLR DSHYLSAKQS IKACSTPSCD 240 LWGFPFFHGK NHKPNHPMSL LNNGSDSFDY NRGAGNFLKK PDRPITVERL HESCTVSQDL 300 GHLTSRSGPA HHLHHQGVLH SRFHAQIWEL ETRVWRRRRP LGLEESLRLW RFPTSQIIVT 360 YSLDQDGILN VNVTAEGTSE HSDIKHMLLV KSSKRGLDSN VVSMMADKLA REELVKLADG 420 SNVEV

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MVQVKECDPN MEKGVLLSLS PPVSDSSGDN TALKPASAQL FENDRPYEMI SKGRLDRGRA  60
ECVRGRTDVQ CLHRWQKVLS PDLEDDLIIE LVAKQGNKKW SEIAKSLPGR IGKQCRERWH  120
NHLNPDIKRT AWTNEEEKIL IESHKAYGNK WAEIAKLLPG REIQIKSLDK GNRGWLTKGV  180
GADNMIKSPP SNLYYDRAAA ACGLNIEQRE EIYHNYGRLR DSHYLSAKQS IKACSTPSCD  240
LWGFPFFHGK NHKPNHPMSL LNNGSDSFDY NRGAGNFLKK PDRPITVERL HESCTVSQDL  300
GHLTSRSGPA HHLHHQGVLH SRFHAQIWEL ETRVWRRRRP LGLEESLRLW RFPTSQIIVT  360
YSLDQDGILN VNVTAEGTSE HSDIKHMLLV KSSKRGLDSN VVSMMADKLA REELVKLADG  420
SNVEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	340	WRRRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-44	MYB family protein