PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005117.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 699aa MW: 81418.3 Da PI: 7.7455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005117.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	8.1e-24	98	185	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 kfYn+Y+ + GF+vr+++s+k+ ++ +t+ +++Cskeg+r ++k++ ++++ ++++tr+gC+a+l+++++k+g+++v ++e++ Rmu_sc0005117.1_g000017.1 98 KFYNNYGGKHGFNVRIRNSRKN-IENFVTWVRYCCSKEGFRIKDKRR-TNASYSQPVTRCGCQAHLTIQLQKNGNFKVVSFEKN 179 6****************999.6666************9999.99999*************************** PP FAR1 85 HnHela 90 HnH+l Rmu_sc0005117.1_g000017.1 180 HNHPLI 185 **96 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MIKNVIKIRY DREYVVSYVG TKLRMYVGEP ARLMDNANCT SLGNQPTSNT KDLQGKEQCD 60 HSHCEPTDDL HVVNENNEEA IEEVILGKEF MDVESASKFY NNYGGKHGFN VRIRNSRKNI 120 ENFVTWVRYC CSKEGFRIKD KRRTNASYSQ PVTRCGCQAH LTIQLQKNGN FKVVSFEKNH 180 NHPLISTPMK HLLKVNRNIS EAQKAHADDA ECSGFSIKAT VELMSKEVGG PEYLGFSHKD 240 YMNYIHRKRM SKMEKGDAGA ILQYFQKMQS ENSSYFYSIQ LDEDDMITNI FWADARSVSD 300 YSHFGDVLCF DTTYRTNEYG RPFAPFVGVN HHKQTTLFGA ALLYDETTKS FRWLFETFLS 360 TMFGKQPLTI LTDQSAAMAK AIKDVFPQAT HRLCVWHLYQ NAAKNLSHVF HGSSEFVEDF 420 SNCMYDYEFE HEWLLAWNDM LEKYSLKENK WLNNLFELRE KWALVYGRHT FTVDMKSTQH 480 SECMNNVLKK YLRPEHNLLR FFEHYERVLA DRRYEELIAE YKMIQTTPVL VVSAHMLQHA 540 AEVYTPKVFL LFQKEFVRIH NYSTYKVGKS GSTSEYIVSY SSEHNEHLVR YEDSAQNVDC 600 SCKKFTFVGI LCVHALKVLD KKNVKKIPPQ YILKRWTREA KIMSITSYHG NEVHGNPKES 660 IGKRYGYLCR TSRDILTVAA DDEELTRYAH EYPDDVILG

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MIKNVIKIRY DREYVVSYVG TKLRMYVGEP ARLMDNANCT SLGNQPTSNT KDLQGKEQCD  60
HSHCEPTDDL HVVNENNEEA IEEVILGKEF MDVESASKFY NNYGGKHGFN VRIRNSRKNI  120
ENFVTWVRYC CSKEGFRIKD KRRTNASYSQ PVTRCGCQAH LTIQLQKNGN FKVVSFEKNH  180
NHPLISTPMK HLLKVNRNIS EAQKAHADDA ECSGFSIKAT VELMSKEVGG PEYLGFSHKD  240
YMNYIHRKRM SKMEKGDAGA ILQYFQKMQS ENSSYFYSIQ LDEDDMITNI FWADARSVSD  300
YSHFGDVLCF DTTYRTNEYG RPFAPFVGVN HHKQTTLFGA ALLYDETTKS FRWLFETFLS  360
TMFGKQPLTI LTDQSAAMAK AIKDVFPQAT HRLCVWHLYQ NAAKNLSHVF HGSSEFVEDF  420
SNCMYDYEFE HEWLLAWNDM LEKYSLKENK WLNNLFELRE KWALVYGRHT FTVDMKSTQH  480
SECMNNVLKK YLRPEHNLLR FFEHYERVLA DRRYEELIAE YKMIQTTPVL VVSAHMLQHA  540
AEVYTPKVFL LFQKEFVRIH NYSTYKVGKS GSTSEYIVSY SSEHNEHLVR YEDSAQNVDC  600
SCKKFTFVGI LCVHALKVLD KKNVKKIPPQ YILKRWTREA KIMSITSYHG NEVHGNPKES  660
IGKRYGYLCR TSRDILTVAA DDEELTRYAH EYPDDVILG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-138	FAR1 family protein