PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005030.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 354aa MW: 42119.7 Da PI: 7.0107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005030.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.4	5.2e-09	19	69	47	90
FAR1 47 k......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + +k+rr+ ++ ++gC+a+++v +k ++kw+v+ ++ HnH+++ Rmu_sc0005030.1_g000002.1 19 EicdqqtGKKRRRSCSSVKCGCEASMRVLHDKwTNKWKVSVFSDIHNHKIV 69 13444436788889999***********999*************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MQTQKEDDMI EEEEKDEEEI CDQQTGKKRR RSCSSVKCGC EASMRVLHDK WTNKWKVSVF 60 SDIHNHKIVT PARRMMMKSN THMPNAAKDL TEAFQKENLQ ISKVPSMFGG AQNVGFDNRD 120 CYNHLRNVRH KELEYGDAQS VLNYFRKKQA ENPQFFYAIQ CDEDGRATNF FWVDSRSRTA 180 YQYFGDVVTF DTTYQTNKYD MPFAPFTGVN HHFQSIQFGC SLLQDETDAT FLWLFETWLE 240 AMGGRHPLCV ITDQDLAMKG AIAKIFPNTR HRLCIWHIKK KFGEKLSHVY YKKSDFKTSM 300 KKCIWATYRI EDFEEQWKKL IEEHELEQNE WLQQLYEIRE SRFQYIITTH FLPE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MQTQKEDDMI EEEEKDEEEI CDQQTGKKRR RSCSSVKCGC EASMRVLHDK WTNKWKVSVF  60
SDIHNHKIVT PARRMMMKSN THMPNAAKDL TEAFQKENLQ ISKVPSMFGG AQNVGFDNRD  120
CYNHLRNVRH KELEYGDAQS VLNYFRKKQA ENPQFFYAIQ CDEDGRATNF FWVDSRSRTA  180
YQYFGDVVTF DTTYQTNKYD MPFAPFTGVN HHFQSIQFGC SLLQDETDAT FLWLFETWLE  240
AMGGRHPLCV ITDQDLAMKG AIAKIFPNTR HRLCIWHIKK KFGEKLSHVY YKKSDFKTSM  300
KKCIWATYRI EDFEEQWKKL IEEHELEQNE WLQQLYEIRE SRFQYIITTH FLPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	56	KKRRRSCSSVKCGCEASMRVLHDKWTNKWK
2	28	57	KKRRRSCSSVKCGCEASMRVLHDKWTNKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-92	FAR1 family protein