PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005014.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 340aa    MW: 38239.4 Da    PI: 7.6842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005014.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-1780125147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Rmu_sc0005014.1_g000023.1  80 RGHWRPAEDSKLIELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 125
                                899*****************************.***********996 PP
2Myb_DNA-binding569.4e-18132175146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Rmu_sc0005014.1_g000023.1 132 RRAFSEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 175
                                678*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGPQQHHQMR SDSSYRQDLN FFPSQLCLSK TTFGVVANSE MGYGVHDRKS TMYLNLVGDE  60
SDHDDVIQTT AAGKTKLCVR GHWRPAEDSK LIELVAQFGP QNWNLIAEHL DGRSGKSCRL  120
RWFNQLDPRI NRRAFSEEEE ERLLSAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK  180
HREQSNVYKR RKPSSSSQPI IIPPHDHDEE DGTKNNAFSD RSTISINTSN DESGSAASAS  240
TCTNLSLTPS NRPLVPSFFK NINPFQQHKI FGSQMIAESC RIKGNENGQS TVSNSETSGD  300
ESVLTTYRTN NNNVSSMSGE DQNEKTSVMP FIDFLGVGST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-71MYB family protein