PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0004965.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 593aa MW: 66588.1 Da PI: 6.0466 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.1 | 4.7e-24 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Rmu_sc0004965.1_g000010.1 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252 68*******************.9*******************************8 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 201 | 251 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++++v+av+q G + +k+I m+ +t++++ s++qky+ Rmu_sc0004965.1_g000010.1 201 RVVWSVDLHQKFVKAVHQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 251 678***********************************************7 PP | |||||||
3 | Response_reg | 80.3 | 6.3e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 vl+vdD+p+ +++l+++l+k y ev+++ +++al ll+ek+ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge Rmu_sc0004965.1_g000010.1 19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALYLLREKKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGE 100 89*********************.***************999999**********************6644.8*********** PP HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelvk 109 + + + ++ Ga d+l Kp+ ++el++ Rmu_sc0004965.1_g000010.1 101 TSRVMKGVQHGACDYLLKPIRMKELRN 127 ************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence |
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALYLLREKK 60 DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI 120 RMKELRNIWQ HVFRKKIHEI RDIEGHESID GIQLTRNGSD LYDDGYFLGA DDLISSRKRK 180 DIENKYDDKD FGDSSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR 240 ENVASHLQKY RLYLSRLQKE NDLKSSFGGM KHSDYATKDP QGIFGVQNSI SIPQHDVTNG 300 SYRFSGNSLV APTVVDPKRL EDDVKGIIPE PVAEPKRGST RSSQVDLSHS YAETKKGLIG 360 NVADSLKIRS SQMGVNHSFA SVESEINFTI PTKYSWIEAQ MKQEHKPVVQ LDNGFNKPQP 420 PGVQHHLQAD LLQPIPSISS RPSILDEETN RPIKNKPSQA AYRNSHISHV SPTITAADSF 480 SEQTKSCVVD QGFDPSSGSL SNMKNQGFNL SCLTNFEPGQ KNLFFGSGSS CASLDDEWQI 540 CLYPADYFGM NLEVSEYNDA EVPAHLYEAM RFGCEYPCES SEYSLADQSL FIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-130 | ARR-B family protein |