PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004911.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 354aa MW: 39922.4 Da PI: 8.8326

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004911.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.5	2.7e-55	174	277	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa Rmu_sc0004911.1_g000014.1 174 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 257 89**988888******************************************************************** PP NF-YC 82 avtrtdifdflvdivprdel 101 a+trtdifdflvdivpr++l Rmu_sc0004911.1_g000014.1 258 AITRTDIFDFLVDIVPREDL 277 ***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MQNYQFGTPS LKLDLRMIRK VKRKVIAGTT NQNWRFFIVG RVDVNTPPTP IPPTQLHSFP 60 VSYFIRFPNF SQPNLKALQV VEQNPEPENK QTDKRMDQQG HGHPTTMGVP GAGQASYGVN 120 PYQPSQIMGL SPTGSVGMMQ SPTQPGGPSA PSQLAQHQAY QHIHQQQQQQ LQQQLQNFWS 180 GQYQEIEQAN DFKNHSLPLA RIKKIMKADE DVRMISAEAP VIFARACEMF ILELTLRSWN 240 HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPREDLKDE VLASIPRGGN VPVVGPADGL 300 PYYYMPAQHP PQVGAPGMMV GKPVMDQNMY GQPTHPYMAQ PAWPQQQQPH KDSE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MQNYQFGTPS LKLDLRMIRK VKRKVIAGTT NQNWRFFIVG RVDVNTPPTP IPPTQLHSFP  60
VSYFIRFPNF SQPNLKALQV VEQNPEPENK QTDKRMDQQG HGHPTTMGVP GAGQASYGVN  120
PYQPSQIMGL SPTGSVGMMQ SPTQPGGPSA PSQLAQHQAY QHIHQQQQQQ LQQQLQNFWS  180
GQYQEIEQAN DFKNHSLPLA RIKKIMKADE DVRMISAEAP VIFARACEMF ILELTLRSWN  240
HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPREDLKDE VLASIPRGGN VPVVGPADGL  300
PYYYMPAQHP PQVGAPGMMV GKPVMDQNMY GQPTHPYMAQ PAWPQQQQPH KDSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	253	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	7e-78	NF-YC family protein