PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004888.1_g000041.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 475aa MW: 54850.2 Da PI: 7.9531

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004888.1_g000041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	123	215	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+ Ak +GF+vr+++++ s + ++++t+ ++vCs +gkr+e+ + +++ r++++etr +C + +kv+ ++ + + v+++ Rmu_sc0004888.1_g000041.1 123 SFYNASAKAMGFDVRNDYKRLSiHITRRVTSLRLVCSAQGKRREKYISnEKRLRKPKKETRFNCPCLFKVRYRSnINAYIVDDF 206 5****************999889999**********99987735667899*************9899*** PP FAR1 82 eleHnHela 90 ++H+H+la Rmu_sc0004888.1_g000041.1 207 ITNHSHQLA 215 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDGSYEPSIS DIGLVSQNSI NGSDCNEMQY KGVRYDKLST EDLKGQEFGL GLRIPVWVFR 60 PVIARVSMDG SYEPSIYDIG LVSQSLVNGS DCNEMQYKGV RYDKLSTEDL KGQEFKTVEE 120 AESFYNASAK AMGFDVRNDY KRLSIHITRR VTSLRLVCSA QGKRREKYIS NEKRLRKPKK 180 ETRFNCPCLF KVRYRSNINA YIVDDFITNH SHQLAQAHES HLLRSHRSVE DHHLALATSM 240 QRVSVKPCHT YEYIVDKSGG FKNVGFIMKD LYNKLDSRRR EILLEGDAEA ALAYMRGKVA 300 TDSHFYCKFS IDEDNRLVNM FWRDSNSLVD YTFFGDVLVF DSTYKTNPYE KPLVLFVGSN 360 NHLSTIVFGF ALLMDETIET YTWVLETFIS SMNNKRPVAV LTEGDEAMRR AIEVVLPGCP 420 HHLCTWHIAN NARRHLRKNN VFSEFRRCMW DEVTPDGFEK RWNAMVNTHG LHNKD

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDGSYEPSIS DIGLVSQNSI NGSDCNEMQY KGVRYDKLST EDLKGQEFGL GLRIPVWVFR  60
PVIARVSMDG SYEPSIYDIG LVSQSLVNGS DCNEMQYKGV RYDKLSTEDL KGQEFKTVEE  120
AESFYNASAK AMGFDVRNDY KRLSIHITRR VTSLRLVCSA QGKRREKYIS NEKRLRKPKK  180
ETRFNCPCLF KVRYRSNINA YIVDDFITNH SHQLAQAHES HLLRSHRSVE DHHLALATSM  240
QRVSVKPCHT YEYIVDKSGG FKNVGFIMKD LYNKLDSRRR EILLEGDAEA ALAYMRGKVA  300
TDSHFYCKFS IDEDNRLVNM FWRDSNSLVD YTFFGDVLVF DSTYKTNPYE KPLVLFVGSN  360
NHLSTIVFGF ALLMDETIET YTWVLETFIS SMNNKRPVAV LTEGDEAMRR AIEVVLPGCP  420
HHLCTWHIAN NARRHLRKNN VFSEFRRCMW DEVTPDGFEK RWNAMVNTHG LHNKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-57	FAR1 family protein