PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004886.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28535.9 Da PI: 5.0429 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.1 | 3.9e-56 | 72 | 176 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaa Rmu_sc0004886.1_g000006.1 72 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAA 155 89*****998899*********************************************************************** PP NF-YC 82 avtrtdifdflvdivprdelk 102 a+trtdifdflvdivprde+k Rmu_sc0004886.1_g000006.1 156 AITRTDIFDFLVDIVPRDEIK 176 ******************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MDNNPNAAAT ATAITAQHQH QAQSATYPPA QGGPPSSVAA APFHHLLQAQ QQQLQMFWNY 60 QRQEIEQAQQ QQLQMFWNYQ RQEIEQVNDF KNHQLPLARI KKIMKADEDV RMISAEAPVL 120 FAKACELFIL ELTIRSWLHA EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDEIKDEAG 180 LGAVGMVGTT ASGVPYYYPP IGQPAGAPGG MMIGRPAMDP TGVYAQPPSQ AWQSVWQTAA 240 DDGSYGSGGS SGQGNLDGQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-84 | NF-YC family protein |