PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004838.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 435aa    MW: 49669.7 Da    PI: 5.5563
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004838.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.2e-09104149755
                        AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                r++  + rW A++       k  k  ++g+f+t eeAa+a++ a  k +g
  Rmu_sc0004838.1_g000011.1 104 RRYGGNMRWQARLGKG----KDtKGLYVGTFDTQEEAARAYDIAVIKCRG 149
                                5555689*****6663....236*********************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MRVQRKRPPT KKGKKASGQR SSRFRGVTRY PGHFEAFLWD NSDPQVKGKT GGFREEEQAA  60
RAHDLAALKY WGDSTPLNFP VSDYMKELEE MQAYTKKDYL LHIRRYGGNM RWQARLGKGK  120
DTKGLYVGTF DTQEEAARAY DIAVIKCRGG REAVTNFDLS HYDVKGILES PNIPIENGAS  180
KFIRWTAADH IIQSRRTTNN VTVSQLQVDS SGNNPNITPI APPLFEPTMQ SLETHCNSNP  240
EQQYLCPSHS PNQNNDQIHI FQFPQYFNNP NIEFDHLPCY QNPNFPINPS FDNWGTHVEN  300
EQIEPSLQFQ PILTPENHEF QFHQYNSNNS QPHLPQNPCS SSLQDFQNPN CHENPNIFSE  360
LTNLQSGSDI REFPSGQEPG ATFAMMGTNE SHGDCTNTVE ENRNFAEDFR VDNPDMDISS  420
SSWFEMLMTL NSSDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.13e-51AP2 family protein