PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004721.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 300aa    MW: 33652.7 Da    PI: 9.8837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004721.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-082772245
                               SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                +WT+ E + + +a +++ ++   +W+++a++++ g+t  +++  + 
  Rmu_sc0004721.1_g000002.1 27 SKWTPAENKMFENALALHDKDtpdRWHKVAAMIP-GKTVGDVVKQYK 72
                               58********************************.****99998875 PP
2Myb_DNA-binding46.49e-15135179347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Rmu_sc0004721.1_g000002.1 135 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                                8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MKLEMEILSP SSYFSASNWL LEETKSSKWT PAENKMFENA LALHDKDTPD RWHKVAAMIP  60
GKTVGDVVKQ YKELEADVGK IEAGLVPIPG YGTSPFTLEW VNRHGYDGFK QTYGIGGKRS  120
SSTRPADHER KKGVPWTEDE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQHSGGKDK RRASIHDITT VNLSETRTPS PDNKPPSPPD HHHSAAFPQQ PNSARIPPFQ  240
WHQGGNGANM AFGQAHGNMF MSSTYGVGSY GLNKSAVHES YYAPQNMVFQ MQSAQHYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-105MYB family protein