PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004657.1_g000064.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 233aa    MW: 26756.6 Da    PI: 9.1419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004657.1_g000064.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-17956148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT eEd ll ++++++G g+W++I+   g++R++k+c++rw +yl
  Rmu_sc0004657.1_g000064.1  9 RGAWTIEEDNLLRQCIAKHGEGRWRLIPPAAGLNRCGKSCRLRWVNYL 56
                               89********************************************97 PP
2Myb_DNA-binding40.37.1e-1362105146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg +  +E +ll +++++lG++ W++Ia +++ gRt++++k++w++
  Rmu_sc0004657.1_g000064.1  62 RGDFEDDEVDLLHRLHNLLGNR-WSLIAGRLP-GRTANDVKNFWNT 105
                                788999****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEDQSGLRRG AWTIEEDNLL RQCIAKHGEG RWRLIPPAAG LNRCGKSCRL RWVNYLKPDI  60
KRGDFEDDEV DLLHRLHNLL GNRWSLIAGR LPGRTANDVK NFWNTKRRRD KPQRLVKPII  120
LRPKPRRLIS TSSLCLTGQG LIGDQSQLKK NISMALPTSS ASPTSPIQQE IDRLRAFLEE  180
EESIRTTTCF SLTPEGLFIE DHIQSENSIS CRALPTSTAL EDQLDWWMTF LDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-47MYB family protein