PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004637.1_g000011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26555.3 Da PI: 9.1419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 9 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++++G g+W++I+ R++k+c++rw +yl Rmu_sc0004637.1_g000011.1 9 RGAWTIEEDNLLRQCIAKHGEGRWRLIPPAAD--RCGKSCRLRWVNYL 54 89*****************************8..************97 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.6e-13 | 60 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +E +ll +++++lG++ W++Ia +++ gRt++++k++w++ Rmu_sc0004637.1_g000011.1 60 RGNFEDDEVDLLHRLHNLLGNR-WSLIAGRLP-GRTANDVKNFWNT 103 8999******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MEDPSGLRRG AWTIEEDNLL RQCIAKHGEG RWRLIPPAAD RCGKSCRLRW VNYLKPDIKR 60 GNFEDDEVDL LHRLHNLLGN RWSLIAGRLP GRTANDVKNF WNTKRRRDKP QRLVKPIILR 120 PKPRRLISTS SLCLTGQGLI GDQSQLKKNI SMALPTSSAS PTSPIQQEID RLRAFLEEEE 180 SIRTTTCFSL TPEGLFIEDH IQSENSISCR ALPTSTALED QLDWWMTFLD R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 2e-43 | MYB family protein |