PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004621.1_g000008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 159aa MW: 17791 Da PI: 9.8045 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.6e-30 | 55 | 125 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + +kdrhsk++T++g+Rd RvRl a++a++f+d+qd+LG+d++sk+++ L+++ak+ai+el+ +++ ++c Rmu_sc0004621.1_g000008.1 55 TDRKDRHSKVYTAKGPRDHRVRLAAHTAIQFYDVQDRLGYDRPSKAVDCLIKKAKAAIDELPPW-NPNINFC 125 679**********************************************************987.3333455 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MEYARRKMGE SHNNLHHRPM TSSSAASRLG LGIRTASSST ASEIAGARGH ILRATDRKDR 60 HSKVYTAKGP RDHRVRLAAH TAIQFYDVQD RLGYDRPSKA VDCLIKKAKA AIDELPPWNP 120 NINFCSDKIF FDGADIRRVG HAEREHAFLD GGDSEFFVC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 4e-38 | TCP family protein |