PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004564.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 503aa MW: 58093.6 Da PI: 4.9077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004564.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.3e-22	128	211	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++le Rmu_sc0004564.1_g000003.1 128 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLE 206 69**************************************99888.....88999*********************** PP FAR1 85 HnHel 89 HnH + Rmu_sc0004564.1_g000003.1 207 HNHLF 211 *77 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MTGDATFSPT NRALSFTIEE GSQNSEQLLE DENNDLGNDC EQLFEIDGNE PESERDDTSD 60 QFFEIDSNDN ENDRGDLNEQ LFDIQGNDHE MSRNDDTVID GQNGGSQEKV YPQPVVGLEF 120 DSYDDAYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI KEANSRKKET 180 RTGCLAMIRL RLVESNRWRV DEVKLEHNHL FDPERAQNSK SHKKMDSGAK RKMEPTLDVE 240 VRTIKLYRTP GADIVGYGSS NSYEGESNSY VDVSKRLKLK QGDASAIYKY FSRVQLTDPN 300 FFYVNDLSDE GHLRNVFWID SRSRAAYSYF GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ 360 TILLGCGLLA DETVETYIWL FRAWLTCMSG RPPQTIITNQ CKAMHSAIVE VFPRAHHRLC 420 TSHVVQSILE NMEALQDYEA FQMILSRTVY DSLKADEFES GWEDMIQRFG IRNHEFLQTL 480 YEDRERWAFL RIWKHCKTTR RFR

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MTGDATFSPT NRALSFTIEE GSQNSEQLLE DENNDLGNDC EQLFEIDGNE PESERDDTSD  60
QFFEIDSNDN ENDRGDLNEQ LFDIQGNDHE MSRNDDTVID GQNGGSQEKV YPQPVVGLEF  120
DSYDDAYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI KEANSRKKET  180
RTGCLAMIRL RLVESNRWRV DEVKLEHNHL FDPERAQNSK SHKKMDSGAK RKMEPTLDVE  240
VRTIKLYRTP GADIVGYGSS NSYEGESNSY VDVSKRLKLK QGDASAIYKY FSRVQLTDPN  300
FFYVNDLSDE GHLRNVFWID SRSRAAYSYF GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ  360
TILLGCGLLA DETVETYIWL FRAWLTCMSG RPPQTIITNQ CKAMHSAIVE VFPRAHHRLC  420
TSHVVQSILE NMEALQDYEA FQMILSRTVY DSLKADEFES GWEDMIQRFG IRNHEFLQTL  480
YEDRERWAFL RIWKHCKTTR RFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	1e-158	FAR1 family protein