PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004507.1_g000033.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24834.4 Da    PI: 8.8271
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004507.1_g000033.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34.1e-1810461551
                               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +R+++++KKA+ LSvLCdaeva+i f s+gkl+e+ss
  Rmu_sc0004507.1_g000033.1 10 RRQATLFKKAHQLSVLCDAEVAIIAFTSNGKLHEFSS 46
                               79*********************************96 PP
2K-box27.99.8e-11881632296
                      K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee.lqkkekelqeenkaLrk 96 
                                  Lk +   L  e+ +++G++L++Ls +eL  Le+q   +l ++ +kK+ell+e++++ + + e+++ +e+++L +
  Rmu_sc0004507.1_g000033.1  88 HELKGKHAALSLEISRRMGKELDDLSREELCALEEQQLWALLSVNDKKKELLVEMLQRsMSRDEQRAVQEKENLIR 163
                                679999999*********************************************9986255667777788887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MPTTENLGIR RQATLFKKAH QLSVLCDAEV AIIAFTSNGK LHEFSSTSME HTLSRYKGKV  60
EQSRPEESRR HEPAKLDEPK PCNNYILHEL KGKHAALSLE ISRRMGKELD DLSREELCAL  120
EEQQLWALLS VNDKKKELLV EMLQRSMSRD EQRAVQEKEN LIRGFEGRRR ERPYVLQDHG  180
LNRMVHGTKL KAVSLYNRPL QISDEHSDIL QLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-23MIKC_MADS family protein