PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004500.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 1003aa MW: 110564 Da PI: 7.2535

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004500.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.7	2.7e-14	579	617	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+k+kClk+YC+Cf+ag +C+ +C C++C+N+ e Rmu_sc0004500.1_g000005.1 579 CKRCNCRKTKCLKLYCDCFSAGIYCDTTCACQECFNRPE 617 79**********************************876 PP
2	TCR	48.5	1.7e-15	656	694	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+C+N Rmu_sc0004500.1_g000005.1 656 RHKRGCNCKKSMCLKKYCECYQANVGCSNGCRCEGCQNA 694 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MAAYSPMAET NLDRCRAQVV AREEMGWNLR ERDKSLHRRA ETWLRPEPWE TGRAPCRLGF 60 HTIMDSPDFT KATASPSSDS PPVQESPVFS FINNLSPIKT VKATHVAPAF PGLSSPPLVF 120 TSPRVNPYAE TSFLKRRSQH PELSGAGIPK THDEGKKFAD SAGDHVKSLT QLQLGLITDT 180 RDCKTKNFVE THPCSSSGFV DEYLADSTEV DCVNSDQSVN PHLEHSSSVL EPSRSGLIKS 240 KELTLTLGNK NDNATNSRTE AQAPFMTSEQ AHEYNQGKQT FIAKLTRSEK QRNDELRFNE 300 CTNIESALSV DNAFRREYHQ EFLDRGLRGE HQNDYDYCPQ SLAGALHNGQ VYEDENAGSI 360 PNRRIENAVM HASKRRCLRF EEAPPCTSGK GDGSLSLSEK VSNSEPPTST VETEMVESPY 420 VDLITSTKTQ TAASLPPRST GKSRLTVSKP SGIGLHLNSI VNAASVVRGA TSIKLADRYM 480 GVQVMNSASI NVRRCPNSLN VVEKDSAGGV DWRNETETSV AASSATTQSP HSVEFEHHGP 540 IHEIRISDSH SIDSYEECNQ SSPNTKRKRA LRNIDSDGCK RCNCRKTKCL KLYCDCFSAG 600 IYCDTTCACQ ECFNRPEYED TVLETRQKIE SRNPLAFAPK VVEREDENQF TPASARHKRG 660 CNCKKSMCLK KYCECYQANV GCSNGCRCEG CQNAYGKRGE FVDVDSSVSE EVITDKDGTE 720 IRESTFDEKL QMVATRKDSN DSPSLTPLTP SLQCFDDAHN VSKSRVLPAI CRPSPQSALT 780 IISHHKNSTR SPQRNSENSD NLMDTSKGLL DVGSYDWRED YENIGLETTS PRCYAVPTTC 840 HLTPLSGPGS LAITSSASLT TRDLTNASQV QLRPGSHCLL SGSSLHWRSS PVTPMHRFGG 900 MKSFQGIDSE KGHHDFLQDD TPEILKDTSI PIKSVKVSSP NKKRVSPPHS HNHELGTSFS 960 GGLRSGRKFI LKAVPSFPPL TPCIGSKGSS TIQNMNNPLQ DKG

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MAAYSPMAET NLDRCRAQVV AREEMGWNLR ERDKSLHRRA ETWLRPEPWE TGRAPCRLGF  60
HTIMDSPDFT KATASPSSDS PPVQESPVFS FINNLSPIKT VKATHVAPAF PGLSSPPLVF  120
TSPRVNPYAE TSFLKRRSQH PELSGAGIPK THDEGKKFAD SAGDHVKSLT QLQLGLITDT  180
RDCKTKNFVE THPCSSSGFV DEYLADSTEV DCVNSDQSVN PHLEHSSSVL EPSRSGLIKS  240
KELTLTLGNK NDNATNSRTE AQAPFMTSEQ AHEYNQGKQT FIAKLTRSEK QRNDELRFNE  300
CTNIESALSV DNAFRREYHQ EFLDRGLRGE HQNDYDYCPQ SLAGALHNGQ VYEDENAGSI  360
PNRRIENAVM HASKRRCLRF EEAPPCTSGK GDGSLSLSEK VSNSEPPTST VETEMVESPY  420
VDLITSTKTQ TAASLPPRST GKSRLTVSKP SGIGLHLNSI VNAASVVRGA TSIKLADRYM  480
GVQVMNSASI NVRRCPNSLN VVEKDSAGGV DWRNETETSV AASSATTQSP HSVEFEHHGP  540
IHEIRISDSH SIDSYEECNQ SSPNTKRKRA LRNIDSDGCK RCNCRKTKCL KLYCDCFSAG  600
IYCDTTCACQ ECFNRPEYED TVLETRQKIE SRNPLAFAPK VVEREDENQF TPASARHKRG  660
CNCKKSMCLK KYCECYQANV GCSNGCRCEG CQNAYGKRGE FVDVDSSVSE EVITDKDGTE  720
IRESTFDEKL QMVATRKDSN DSPSLTPLTP SLQCFDDAHN VSKSRVLPAI CRPSPQSALT  780
IISHHKNSTR SPQRNSENSD NLMDTSKGLL DVGSYDWRED YENIGLETTS PRCYAVPTTC  840
HLTPLSGPGS LAITSSASLT TRDLTNASQV QLRPGSHCLL SGSSLHWRSS PVTPMHRFGG  900
MKSFQGIDSE KGHHDFLQDD TPEILKDTSI PIKSVKVSSP NKKRVSPPHS HNHELGTSFS  960
GGLRSGRKFI LKAVPSFPPL TPCIGSKGSS TIQNMNNPLQ DKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-57	CPP family protein