PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004482.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 780aa MW: 90751.2 Da PI: 8.0747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004482.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1.1e-16	61	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................... 47 kfY+ Y+ GFs+rk + k++ + +++r++vCsk+g r+++ kk Rmu_sc0004482.1_g000011.1 61 KFYSYYSLAKGFSMRKCRLDKNRARTLVIRRDLVCSKQGMRRDSGKKdsgpreeaalkeypydglqnvkekhgmtnrrsvgnns 144 6*****************************************9999******************************** PP FAR1 48 ..........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ +r+tr +r +C a+++v++ + +g+++ t++ +eHnH+la Rmu_sc0004482.1_g000011.1 145 etnptghnsnKKLRRNTRRISRGNCPARFTVRLCTkRGVYYATEFITEHNHSLA 198 ***998888899*************999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MDLNSEQRAG LEDYVEEMEE TYLSEGVEMD DCTHYRGKPY KDLTLEDLNG VEFKTLEEVE 60 KFYSYYSLAK GFSMRKCRLD KNRARTLVIR RDLVCSKQGM RRDSGKKDSG PREEAALKEY 120 PYDGLQNVKE KHGMTNRRSV GNNSETNPTG HNSNKKLRRN TRRISRGNCP ARFTVRLCTK 180 RGVYYATEFI TEHNHSLAKP EHRQFLRSQR HVRDDALAQV NALRKVSVRI CRAYEYLVHQ 240 AGGYKFVGFT LKDLYNAMHG ERAEVMIDGD AQSSITWMNL KALQDPNFSC IFSVDVEGRL 300 ANMFWRDGQS LTDYNAFGDV LIFDSTYKSN IYEKPLAVFV GCNNHRATVL FGCALLVDET 360 EETYNWVITA FLTSMNKKKP ISVITDGDDA MRNAVTNLIP EARHRLCAWH IGKNVCQHLK 420 DVDTQRYFFY FIFAGLTVEE WESQWHVFVA MNRLENNKWV NSMYHKRERW AEAFFRDHFF 480 GGICSTQRCE GMHRNLKGGI GRYMRLFEVL PRMEKTIERI RNRVLLDDYR SEQFQPVYGT 540 HMLCLEEEIG KKFTHDVFLL IRDQIKFESK FVVGNVDVNI ETGASLFMIS QYEKPERRWI 600 VSCNNNEKNV TFLCSCQLFE SDGIPCCHIF SVLKYQMRTT FPDSLVKQRW TKEATVKKTL 660 SSLGLENDNS VQLARYGDLM SACAKFCHLA SFSEEGYEET KAALSRLTIR AQKYRVPNQN 720 TVQFDSCEGL HPNVIKNTVQ FDSCPIRVSC GHWLLHIHLR FVVFHYLRDD GSDCFFLECH

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MDLNSEQRAG LEDYVEEMEE TYLSEGVEMD DCTHYRGKPY KDLTLEDLNG VEFKTLEEVE  60
KFYSYYSLAK GFSMRKCRLD KNRARTLVIR RDLVCSKQGM RRDSGKKDSG PREEAALKEY  120
PYDGLQNVKE KHGMTNRRSV GNNSETNPTG HNSNKKLRRN TRRISRGNCP ARFTVRLCTK  180
RGVYYATEFI TEHNHSLAKP EHRQFLRSQR HVRDDALAQV NALRKVSVRI CRAYEYLVHQ  240
AGGYKFVGFT LKDLYNAMHG ERAEVMIDGD AQSSITWMNL KALQDPNFSC IFSVDVEGRL  300
ANMFWRDGQS LTDYNAFGDV LIFDSTYKSN IYEKPLAVFV GCNNHRATVL FGCALLVDET  360
EETYNWVITA FLTSMNKKKP ISVITDGDDA MRNAVTNLIP EARHRLCAWH IGKNVCQHLK  420
DVDTQRYFFY FIFAGLTVEE WESQWHVFVA MNRLENNKWV NSMYHKRERW AEAFFRDHFF  480
GGICSTQRCE GMHRNLKGGI GRYMRLFEVL PRMEKTIERI RNRVLLDDYR SEQFQPVYGT  540
HMLCLEEEIG KKFTHDVFLL IRDQIKFESK FVVGNVDVNI ETGASLFMIS QYEKPERRWI  600
VSCNNNEKNV TFLCSCQLFE SDGIPCCHIF SVLKYQMRTT FPDSLVKQRW TKEATVKKTL  660
SSLGLENDNS VQLARYGDLM SACAKFCHLA SFSEEGYEET KAALSRLTIR AQKYRVPNQN  720
TVQFDSCEGL HPNVIKNTVQ FDSCPIRVSC GHWLLHIHLR FVVFHYLRDD GSDCFFLECH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-79	FAR1 family protein