PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004404.1_g000011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 412aa MW: 46069.3 Da PI: 7.4288 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.7e-09 | 79 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 r WTte+d++l+ avk+ + +Wk++a +g + + ck+rwq++ Rmu_sc0004404.1_g000011.1 79 RRYWTTEDDKKLKYAVKKVAARkgghikDWKKVAFIVG--KRGDLCKDRWQNV 129 567**********************************9..45559******96 PP | |||||||
2 | Myb_DNA-binding | 22.3 | 3e-07 | 136 | 189 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +g+W++eEd++l++a + G++ +t ++ k Rtl qc+ r+q++l Rmu_sc0004404.1_g000011.1 136 KGAWSKEEDQRLLNASASCGSNMLNTMLDVFNsssvdgKIRTLHQCQARLQQLL 189 79********************8888888888888888889**********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence |
MALISNCIGN KVGISKNVAE SDVVKIGRKI VDISYQGRYW TTEDDKKLKY AVKKVAARKG 60 GHIKDWEKVG FIVGKRGERR YWTTEDDKKL KYAVKKVAAR KGGHIKDWKK VAFIVGKRGD 120 LCKDRWQNVV SPDIKKGAWS KEEDQRLLNA SASCGSNMLN TMLDVFNSSS VDGKIRTLHQ 180 CQARLQQLLN GNHSRKLEEK SVEQGNIAGL YQQKAEGVGD EGVADEGVVD EGVAYAQVAD 240 ALTLLQNNYN GEEELEIGDG LTNLFKTYAE ADAASGIAVH NECKLKFLEL KTKRTYRSIV 300 FKIEEKQKQV IVEATGDPTE TYEAFTDSLP TDECCYAVFD FDLPIPEGVP KRQILFIAWL 360 PDTSREENKK IYASALDSFK RELDGIQIEL EATGPSEIGL DVIRNRAAKH EP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 6e-08 | MYB family protein |