PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004350.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 555aa MW: 64968.4 Da PI: 6.2681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004350.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.9e-17	83	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y++Y+k++GF vrk++ +k ++g ++ t C + gk ++++++ + +++++ +t+Ck +++ k+ dgkw++++ +le Rmu_sc0004350.1_g000004.1 83 DYYRKYGKQLGFPVRKRTLRKG-DDGITKYITISCGRAGKFKSKSSN---SLKPHPSVKTDCKTLIRLGKSLDGKWKINSTKLE 162 59*************99998.88889999******999888...999*************************** PP FAR1 85 HnHela 90 HnH l+ Rmu_sc0004350.1_g000004.1 163 HNHGLS 168 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MEQSSNDSED IILTNDEGTV DDSLKSLEDD QENEEEEIIL TNDQGTVDDS SKSLENDQEN 60 EVEEIMRVPS VEMSFDSIDE TYDYYRKYGK QLGFPVRKRT LRKGDDGITK YITISCGRAG 120 KFKSKSSNSL KPHPSVKTDC KTLIRLGKSL DGKWKINSTK LEHNHGLSLR KSCYFPVNRE 180 LSSSIKRKLE LNDVARIWLN KSFNSIVVEA QGYENVPFLE KDARNHIEKF RRLQLKEGDA 240 TAVQTYFLDL QAKNASFFYA IDINEKGRLR NLFWAYARSR AAYQEFGDVV TFDTTYLTNK 300 YEMPFAPFVG VNHHGQSILL KCGLISSEDI ESFIWLFKSW LACMSKNAPN RIITDQYRAM 360 KNVIEIVFPN TRHRWCLWHI LKKIPEKLRG YTKYESILMT LLNIVYDSLA RVEFEERWDE 420 MIKKYELHED NWLNVMYEER NPRVPSFVKD CFWAGMSTTQ RSESKNSFFD GHVNSKTTLK 480 QFVEQYEKAM RSKVEKENYE DFKCFSYSLP GATHYDMEKQ AHDIYTTSKF KEFRDELTSK 540 MYCNFISVEV DNSIL

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MEQSSNDSED IILTNDEGTV DDSLKSLEDD QENEEEEIIL TNDQGTVDDS SKSLENDQEN  60
EVEEIMRVPS VEMSFDSIDE TYDYYRKYGK QLGFPVRKRT LRKGDDGITK YITISCGRAG  120
KFKSKSSNSL KPHPSVKTDC KTLIRLGKSL DGKWKINSTK LEHNHGLSLR KSCYFPVNRE  180
LSSSIKRKLE LNDVARIWLN KSFNSIVVEA QGYENVPFLE KDARNHIEKF RRLQLKEGDA  240
TAVQTYFLDL QAKNASFFYA IDINEKGRLR NLFWAYARSR AAYQEFGDVV TFDTTYLTNK  300
YEMPFAPFVG VNHHGQSILL KCGLISSEDI ESFIWLFKSW LACMSKNAPN RIITDQYRAM  360
KNVIEIVFPN TRHRWCLWHI LKKIPEKLRG YTKYESILMT LLNIVYDSLA RVEFEERWDE  420
MIKKYELHED NWLNVMYEER NPRVPSFVKD CFWAGMSTTQ RSESKNSFFD GHVNSKTTLK  480
QFVEQYEKAM RSKVEKENYE DFKCFSYSLP GATHYDMEKQ AHDIYTTSKF KEFRDELTSK  540
MYCNFISVEV DNSIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-101	FAR1 family protein