PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004345.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 385aa MW: 43964.1 Da PI: 9.439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004345.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	62	143	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +YAke+GFs+r +++ +sk++++ +++++vC+k+g ++ e +k r+r ++gCka++ v ++k +g++ ++ +++ HnH Rmu_sc0004345.1_g000014.1 62 TYAKEAGFSIRSHSNVTSKDKKQLMRKEYVCYKQGDSKVEGEK-----RKRGLPKVGCKARIAVVRKKeSGRYAISVFVEAHNH 140 8*********************************9998877.....999*******9888777************* PP FAR1 88 ela 90 +l+ Rmu_sc0004345.1_g000014.1 141 PLT 143 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MPMPELPSPE VDLADVEFRF REKKKPPRPP KWPPKSYLPK ASDLPLVASV SCRPAPRLPG 60 QTYAKEAGFS IRSHSNVTSK DKKQLMRKEY VCYKQGDSKV EGEKRKRGLP KVGCKARIAV 120 VRKKESGRYA ISVFVEAHNH PLTSPPRVHL LRSHCGVSEV NTVLSQQISL VNVEKHKQFE 180 FFGVQAGGIQ NIGFIQRDLY NYGRTCREEK KGRDGDLLYM HFENEKEKDY SFVYTMDGDE 240 ENRVTRCFWA DSISRRAYSF YGDVVIFDTT YNTNRYGMIF APFSGVNNHG QTIIFACAFL 300 NDETIDTFVW LFKEFLNAMP EDAPENAPKM IITNQDPAMT KAISEALPQT FHRYCRALGN 360 TLAPIQNQST AAISEQIKRK QNQNQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MPMPELPSPE VDLADVEFRF REKKKPPRPP KWPPKSYLPK ASDLPLVASV SCRPAPRLPG  60
QTYAKEAGFS IRSHSNVTSK DKKQLMRKEY VCYKQGDSKV EGEKRKRGLP KVGCKARIAV  120
VRKKESGRYA ISVFVEAHNH PLTSPPRVHL LRSHCGVSEV NTVLSQQISL VNVEKHKQFE  180
FFGVQAGGIQ NIGFIQRDLY NYGRTCREEK KGRDGDLLYM HFENEKEKDY SFVYTMDGDE  240
ENRVTRCFWA DSISRRAYSF YGDVVIFDTT YNTNRYGMIF APFSGVNNHG QTIIFACAFL  300
NDETIDTFVW LFKEFLNAMP EDAPENAPKM IITNQDPAMT KAISEALPQT FHRYCRALGN  360
TLAPIQNQST AAISEQIKRK QNQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-55	FAR1 family protein