PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004300.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29389.9 Da PI: 5.7801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 105 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+ +l+g Rmu_sc0004300.1_g000003.1 105 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSLRG 155 69*******.**********422...25*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MESYSLFQFS NPSQFSPESS FGSSLDSFSW DDALLDTFNN DMLNFPPFNT NHEPQDLLLF 60 DAVAKEPALV AEETHWFGGA VKEEEVTSNS NAFQVFEGKP RKEKSYRGVR RRPWGKYAAE 120 IRDSTRHGVR VWLGTFDSAE AAALAYDQAA FSLRGPLAVL NFPVEVVRES LQEIKCRYDE 180 GCSPIVALKR RHSTRRKSLC KKNSCNKEQG KVKSSIPSKV TKNKTQENVV TQNVVVLEDL 240 GAEYLEELLY QSSCESASFS C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-42 | ERF family protein |