PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004219.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 560aa MW: 60522.3 Da PI: 4.8783

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004219.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l Rmu_sc0004219.1_g000005.1 39 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.4	6.1e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+v++++++G++ W++ a++++ gRt++++k++w++ Rmu_sc0004219.1_g000005.1 92 KGAFTPEEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MSRTTTDSED GLLSKDQIES PLMDESNGGI GNGGIVLKKG PWTSAEDAIL VEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGALN GTDTAHHDSL 180 QTNSYEIPDV VFDSLKGNSC VLPYVPELPD ISASGMLMKG LGSSPYCGFM PPTMHRQKRP 240 RESTALFPTS GGSYKDGFPQ FDQFENDACD KVARSYGLSF PHDPDPTTKS PLSFGVIQGS 300 HSLSNGNSSA SKPTCGAVKL ELPSLQYPET DLGSWSTSPP PPLLESIDNF IQSPPPVGAF 360 ESDCASPRNS GLLDALLYEA KTLSSTKNHS TDKSSNSSSV TPGEVADSST LNVCETEWEE 420 YGDPISPLGH SATSLFSECT PISASGSSLE EVPPAETLTG SNVKPEPADH AWTPEKQKEA 480 SPPLDYTRPD ALLGSDWLEP STGFKDQSIM NDAIASLLGE DLATDYKHMA SGTSTSNQGW 540 GLGSCPWNNM PAVCQMTDLP

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MSRTTTDSED GLLSKDQIES PLMDESNGGI GNGGIVLKKG PWTSAEDAIL VEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGALN GTDTAHHDSL  180
QTNSYEIPDV VFDSLKGNSC VLPYVPELPD ISASGMLMKG LGSSPYCGFM PPTMHRQKRP  240
RESTALFPTS GGSYKDGFPQ FDQFENDACD KVARSYGLSF PHDPDPTTKS PLSFGVIQGS  300
HSLSNGNSSA SKPTCGAVKL ELPSLQYPET DLGSWSTSPP PPLLESIDNF IQSPPPVGAF  360
ESDCASPRNS GLLDALLYEA KTLSSTKNHS TDKSSNSSSV TPGEVADSST LNVCETEWEE  420
YGDPISPLGH SATSLFSECT PISASGSSLE EVPPAETLTG SNVKPEPADH AWTPEKQKEA  480
SPPLDYTRPD ALLGSDWLEP STGFKDQSIM NDAIASLLGE DLATDYKHMA SGTSTSNQGW  540
GLGSCPWNNM PAVCQMTDLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-142	MYB family protein