PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0004110.1_g000008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29714.9 Da PI: 8.2989 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.9 | 1.8e-11 | 50 | 93 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 +WT eEd l a+ ++Gg +W++Ia+ + +Rt qc++r+ + Rmu_sc0004110.1_g000008.1 50 KWTLEEDTCLTVAHILFGGTkNWNKIAQLVW-RRTQVQCRDRFVN 93 8*****************99***********.**********976 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.7e-14 | 102 | 145 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l a+ ++G W++++++++ Rt+++c rw + Rmu_sc0004110.1_g000008.1 102 GEWTEEEDSILRAAIGEHGHC-WSKVSACVP-QRTDNMCWRRWKVL 145 78*****************99.*********.***********865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MEQGRGCETQ CLVRVIGSPW LLLWEEELVR NALIDGKKQF IQPGQEKVRK WTLEEDTCLT 60 VAHILFGGTK NWNKIAQLVW RRTQVQCRDR FVNSLEPSLK FGEWTEEEDS ILRAAIGEHG 120 HCWSKVSACV PQRTDNMCWR RWKVLFPEEV LVLREERRIR KAALICNFVD CEKERPALGP 180 NDFLVPEDNS TKTLTFPRKT GNIKRGSQSG KTNNISSNCQ VMKKIRSKRR KNYDKICSNE 240 ADICNGDDAS DWDDTIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.3 | 7e-37 | MYB family protein |