PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004082.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SRS

Protein Properties

Length: 351aa MW: 37290.6 Da PI: 8.7968

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004082.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	151.6	5.5e-47	120	255	3	139
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsal 86 sg +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq + a + as + ++r++ s ++s + Rmu_sc0004082.1_g000019.1 120 SGMRACKDCGNRAKKGCEYSRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVAGGVASG-GGGEGDNRSS-SGSSSVA 201 57789*******************************************999988877766644.3444444444.3444444 PP DUF702 87 sstklssaeskkele.tsslPeevsseavfrcvrvssvddgeeelaYqtavsig 139 ++ ++ + +++ + + +slP++v+++avf+c rv+++++ge+e+aYq++v+i+ Rmu_sc0004082.1_g000019.1 202 KRPRVMMPSKNANANlRQSLPDQVRVPAVFKCHRVTAISNGEAEIAYQATVKIS 255 4455444444444440456********************************8 PP
2	DUF702	67.3	5e-21	261	312	103	154
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +slP++v+++avf+c rv+++++ge+e+aYq++v+i+GhvfkG+Lyd+ +++ Rmu_sc0004082.1_g000019.1 261 QSLPDQVRVPAVFKCHRVTAISNGEAEIAYQATVKISGHVFKGLLYDRWVDK 312 679********************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MLGLRDILLI APNHSSVHQQ NQPISSDHPA LPLPSSTALG VGLGIFPLLT ATPCGQNAPT 60 ADGNPDNSRF WSLRTYPELN SSKQDMLSFG NHGAAESQQV AESDDGNVNG EGGGRGGEDS 120 GMRACKDCGN RAKKGCEYSR CRTCCRGRGY DCSTHVRSTW VPAARRRERQ MGVTVAVAGG 180 VASGGGGEGD NRSSSGSSSV AKRPRVMMPS KNANANLRQS LPDQVRVPAV FKCHRVTAIS 240 NGEAEIAYQA TVKISDANLR QSLPDQVRVP AVFKCHRVTA ISNGEAEIAY QATVKISGHV 300 FKGLLYDRWV DKKNEYPCIS HMHLGSGSNQ RNGDSSSPTV PPSNVCVAST S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MLGLRDILLI APNHSSVHQQ NQPISSDHPA LPLPSSTALG VGLGIFPLLT ATPCGQNAPT  60
ADGNPDNSRF WSLRTYPELN SSKQDMLSFG NHGAAESQQV AESDDGNVNG EGGGRGGEDS  120
GMRACKDCGN RAKKGCEYSR CRTCCRGRGY DCSTHVRSTW VPAARRRERQ MGVTVAVAGG  180
VASGGGGEGD NRSSSGSSSV AKRPRVMMPS KNANANLRQS LPDQVRVPAV FKCHRVTAIS  240
NGEAEIAYQA TVKISDANLR QSLPDQVRVP AVFKCHRVTA ISNGEAEIAY QATVKISGHV  300
FKGLLYDRWV DKKNEYPCIS HMHLGSGSNQ RNGDSSSPTV PPSNVCVAST S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-52	SRS family protein