PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004000.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 362aa MW: 39168.8 Da PI: 7.626

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004000.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9e-19	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l +v+++G+++W++I++ ++ gR++k+c++rw + Rmu_sc0004000.1_g000004.1 15 KGPWSPEEDDALQSLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60 79****************************.*********985 PP
2	Myb_DNA-binding	55.3	1.5e-17	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Rmu_sc0004000.1_g000004.1 69 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 111 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MAVNRKEMDR MDRIKGPWSP EEDDALQSLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ 60 LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSSMS 120 DDGDGNGNVF GGGYDGNFHV QPPLKRSVSA GSGVPVSTEL FMNPGSPSGS DVSDSSVQVM 180 SPSHVYRPVA RAGGVLPPVE TTSSSNNNNN SHINLNSDPP TSLSLSLPGV DSCEVSNRVA 240 ATESTIQNQA HPAPAPGHIN LNSDPPTSLS LSLPGVDSCE VSNRVAATES TIQNQAHPAP 300 APVSDPMRSF PAELLELMQG MIKKEVRSYM EGLEQSGFGM MKQQNDGFRN VAVKRIGISR 360 IE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MAVNRKEMDR MDRIKGPWSP EEDDALQSLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ  60
LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSSMS  120
DDGDGNGNVF GGGYDGNFHV QPPLKRSVSA GSGVPVSTEL FMNPGSPSGS DVSDSSVQVM  180
SPSHVYRPVA RAGGVLPPVE TTSSSNNNNN SHINLNSDPP TSLSLSLPGV DSCEVSNRVA  240
ATESTIQNQA HPAPAPGHIN LNSDPPTSLS LSLPGVDSCE VSNRVAATES TIQNQAHPAP  300
APVSDPMRSF PAELLELMQG MIKKEVRSYM EGLEQSGFGM MKQQNDGFRN VAVKRIGISR  360
IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-73	MYB family protein