PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003994.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 545aa MW: 60546.4 Da PI: 5.9674

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003994.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.6e-15	239	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Rmu_sc0003994.1_g000004.1 239 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDMEDKAARAYDLAALKYWG 298 57*****************666664478446******99***********98 PP
2	AP2	49	1.6e-15	343	392	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Rmu_sc0003994.1_g000004.1 343 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 392 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MAPATNWLSF SLMSPMEMLR SSSESESPFA QAYDTAAVTA PSPHYYLDNF YANGWTNPKS 60 EVFYTEGEED QQTKQTHSDS LASFIDPQTQ NQPIPKLEDF LGDSMVRYAD SQTETQDSSL 120 TQIYDQGSAY FGDHHQNQDL KAITGFQAFS ANSGSEVEDS ASMARTQLAC AEFTGHSVES 180 IGNELGFSSC GATNTSNALS LGVTNTNANT QTSNREKAVV AVDTDSAKKI SDTFGQRTSI 240 YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD MEDKAARAYD LAALKYWGPT 300 ATTNFPVSTY SKELEDMKLV TKQEFIASLR RKSSGFSRGA SMYRGVTRHH QQGRWQARIG 360 RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVEAIG KSSLPVGGSA 420 KRLKISLESE EQKPSVTNHD QQQQNSQCSS GSNSNNINFA NSMAQPIQTI PCGIPYDHAA 480 ALYHHNLLQQ FQSYNYYGTT SDSSAGSHPN IATSQMTMAM MPQQQQQQQQ PAEFFLWPQY 540 QTHHS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MAPATNWLSF SLMSPMEMLR SSSESESPFA QAYDTAAVTA PSPHYYLDNF YANGWTNPKS  60
EVFYTEGEED QQTKQTHSDS LASFIDPQTQ NQPIPKLEDF LGDSMVRYAD SQTETQDSSL  120
TQIYDQGSAY FGDHHQNQDL KAITGFQAFS ANSGSEVEDS ASMARTQLAC AEFTGHSVES  180
IGNELGFSSC GATNTSNALS LGVTNTNANT QTSNREKAVV AVDTDSAKKI SDTFGQRTSI  240
YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD MEDKAARAYD LAALKYWGPT  300
ATTNFPVSTY SKELEDMKLV TKQEFIASLR RKSSGFSRGA SMYRGVTRHH QQGRWQARIG  360
RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVEAIG KSSLPVGGSA  420
KRLKISLESE EQKPSVTNHD QQQQNSQCSS GSNSNNINFA NSMAQPIQTI PCGIPYDHAA  480
ALYHHNLLQQ FQSYNYYGTT SDSSAGSHPN IATSQMTMAM MPQQQQQQQQ PAEFFLWPQY  540
QTHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-176	AP2 family protein