PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003976.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 899aa MW: 102773 Da PI: 6.9897

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003976.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.3e-22	142	225	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y+eYA++vGF v++ +s++sk++g++++ ++ Cs++ k+e +++ +r+ + tgCka l++kk++++kw+++++++eH Rmu_sc0003976.1_g000006.1 142 YYREYARSVGFGVTIIASRRSKKTGKFIDIKLACSRYRKQEAGDTE----NRRIQLLSTGCKAGLQMKKRENEKWYIHSFVKEH 221 9***********************************99998777....77788899********************** PP FAR1 86 nHel 89 nHe+ Rmu_sc0003976.1_g000006.1 222 NHEM 225 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MEIDLELPSC EQGKLETRLD KDVNIVETNV EKKSEHVKEA HGLRANESVS GVEDQDDANN 60 VEVRVVDKVV VNTVDAADEM NVEKSGEAVG EARGSSANKS ASDFHGQDDV NNVVANVVDK 120 GFVVREPENG LEFETKEDAY SYYREYARSV GFGVTIIASR RSKKTGKFID IKLACSRYRK 180 QEAGDTENRR IQLLSTGCKA GLQMKKRENE KWYIHSFVKE HNHEMGDGFI NALGGKNKRP 240 ATVACQKKGL QFTLDKADVQ VMFEQLMCMQ DENPNFFYAI EFDNDKRLRS VFWVDANGRR 300 DYNSFCDVVL FDTHYVRNNY KIPLVPIVGV NHHFQYILLG CALLGDETTA AFVWLMRTWL 360 KAVGGQAPRV VITDQEKYLK EAVADVFTDA CHRFCLWHVL TRIHDNVGSI NEDAIFQAKL 420 NKWIYRSWTV QQFEQRWWKL INRFELRENE RLCLFSLYED RKYWAPAYMQ DSCSAGMSTV 480 ERSGSITSFF DRYISQEAMV KDFMEQYKTF LKDRYDMEAN AAFEAQNKQP ELRSLSPFEK 540 QMSTIYTDTI FRKFQGEVLG VDSCHLHKEG QDEATVIFRV DDLEERQNFI VAWNEPELRV 600 CCLCHSFEYK GFLCRHALLV LHMSGVSRIP SHYILKRWMK DARVRHTVSD VSKRLNYRVQ 660 RFNDLCKLAV KLGEEGSLSP ETYQIAFQAL DEVLKQCVNV NNSVRGVSEP NPSSIHGSND 720 LEEGNHSGGM AKLSKKKKTH RKRKGQTEPD GTPIRLQDSY QQMELMNSRA HNLDSCHVPQ 780 QELQGELGSK GRAQDSCYGA QQSMQEMGRL ESVSPICDGY YGNQQASRGH LHSLPTRVGH 840 YGTQQSMQGM FQGQLVFRAP AVHSSFDIRD TLKDLEQSAG SSRCHGSTSK HPLNKHLPQ

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MEIDLELPSC EQGKLETRLD KDVNIVETNV EKKSEHVKEA HGLRANESVS GVEDQDDANN  60
VEVRVVDKVV VNTVDAADEM NVEKSGEAVG EARGSSANKS ASDFHGQDDV NNVVANVVDK  120
GFVVREPENG LEFETKEDAY SYYREYARSV GFGVTIIASR RSKKTGKFID IKLACSRYRK  180
QEAGDTENRR IQLLSTGCKA GLQMKKRENE KWYIHSFVKE HNHEMGDGFI NALGGKNKRP  240
ATVACQKKGL QFTLDKADVQ VMFEQLMCMQ DENPNFFYAI EFDNDKRLRS VFWVDANGRR  300
DYNSFCDVVL FDTHYVRNNY KIPLVPIVGV NHHFQYILLG CALLGDETTA AFVWLMRTWL  360
KAVGGQAPRV VITDQEKYLK EAVADVFTDA CHRFCLWHVL TRIHDNVGSI NEDAIFQAKL  420
NKWIYRSWTV QQFEQRWWKL INRFELRENE RLCLFSLYED RKYWAPAYMQ DSCSAGMSTV  480
ERSGSITSFF DRYISQEAMV KDFMEQYKTF LKDRYDMEAN AAFEAQNKQP ELRSLSPFEK  540
QMSTIYTDTI FRKFQGEVLG VDSCHLHKEG QDEATVIFRV DDLEERQNFI VAWNEPELRV  600
CCLCHSFEYK GFLCRHALLV LHMSGVSRIP SHYILKRWMK DARVRHTVSD VSKRLNYRVQ  660
RFNDLCKLAV KLGEEGSLSP ETYQIAFQAL DEVLKQCVNV NNSVRGVSEP NPSSIHGSND  720
LEEGNHSGGM AKLSKKKKTH RKRKGQTEPD GTPIRLQDSY QQMELMNSRA HNLDSCHVPQ  780
QELQGELGSK GRAQDSCYGA QQSMQEMGRL ESVSPICDGY YGNQQASRGH LHSLPTRVGH  840
YGTQQSMQGM FQGQLVFRAP AVHSSFDIRD TLKDLEQSAG SSRCHGSTSK HPLNKHLPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	740	KKKKTH
2	736	741	KKKKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1 family protein