PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003973.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 652aa MW: 72729.2 Da PI: 6.967

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003973.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.9	9.3e-12	331	387	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g Rmu_sc0003973.1_g000013.1 331 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEQKAARAYDLAALKYWG 387 78*****************87776664446655.7799************98 PP
2	AP2	34	7.1e-11	432	476	7	55
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Rmu_sc0003973.1_g000013.1 432 R-HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 476 4.6779****988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MKSMSNDNTN SSNNWLDFSL SPNMKMDVPH PPSDPHHQIS QSSSPSIPNA FFNSPPHFNY 60 GIYYGVDQGD HTGLYSALPM MPIKSDGSLC IMEALNRSHH PQGMGTSSSS STPKLEDFFG 120 GATMGTHNHY DNNDREALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHFSSYY 180 SGLKTHEMMF EDHQKQQAQI EHYNNVQNPS LGSLNHSISD MKNWVPRNFS ANNNQGVLEQ 240 NMIGCMGDNG AESAGSIGSM PYGDLQCLSL SMSPGSQSSC VTGSQQISPA LTTNTDCVVA 300 MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQGGYDM EQKAARAYDL AALKYWGPST HINFPLENYQ KELEEMKNMS RQEYVAHLRR 420 KSSGFSRGAS IRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV 480 TNFDITRYDV DRIMASNTLL AGDNAKRNKV LPRPSDEATN QISNGEQSIT VAVKDTNEVE 540 EWKMMQLFQS SQQVVDHQNV IQADHRAEES ATMGTTTHLS NTSSLVTSLS SSREGSPDKS 600 SQPSFFGMPP TASKFFSSSS TNNTVSSWIP AVQSRPGLSL PHMPIFAAWT DA

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MKSMSNDNTN SSNNWLDFSL SPNMKMDVPH PPSDPHHQIS QSSSPSIPNA FFNSPPHFNY  60
GIYYGVDQGD HTGLYSALPM MPIKSDGSLC IMEALNRSHH PQGMGTSSSS STPKLEDFFG  120
GATMGTHNHY DNNDREALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHFSSYY  180
SGLKTHEMMF EDHQKQQAQI EHYNNVQNPS LGSLNHSISD MKNWVPRNFS ANNNQGVLEQ  240
NMIGCMGDNG AESAGSIGSM PYGDLQCLSL SMSPGSQSSC VTGSQQISPA LTTNTDCVVA  300
MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQGGYDM EQKAARAYDL AALKYWGPST HINFPLENYQ KELEEMKNMS RQEYVAHLRR  420
KSSGFSRGAS IRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV  480
TNFDITRYDV DRIMASNTLL AGDNAKRNKV LPRPSDEATN QISNGEQSIT VAVKDTNEVE  540
EWKMMQLFQS SQQVVDHQNV IQADHRAEES ATMGTTTHLS NTSSLVTSLS SSREGSPDKS  600
SQPSFFGMPP TASKFFSSSS TNNTVSSWIP AVQSRPGLSL PHMPIFAAWT DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-121	AP2 family protein