PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003862.1_g000023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 136aa MW: 15595.5 Da PI: 7.5935 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.4 | 2.7e-19 | 50 | 135 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y eY+ ++GFsvr+ + +k+ n+ + + ++ skeg++ +++ + e ++ r trtgC+ak+ ++++++w+ t ++ +H Rmu_sc0003862.1_g000023.1 50 LYYEYGARMGFSVRIMQRRKT--NNVVRQVNYAYSKEGFKLDSDPS-EVKKADRLDTRTGCTAKILFGLQDNNVWKATLFVPDH 130 79**************98888..889****************9999.9999********************************* PP FAR1 86 nHela 90 nH+la Rmu_sc0003862.1_g000023.1 131 NHKLA 135 ***97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence |
MPTVSKVEDD QEHNKTIDLG KDSMIVNRQA SNNDNLYGVI VNSEEEAYNL YYEYGARMGF 60 SVRIMQRRKT NNVVRQVNYA YSKEGFKLDS DPSEVKKADR LDTRTGCTAK ILFGLQDNNV 120 WKATLFVPDH NHKLAT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-14 | FAR1 family protein |