PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003633.1_g000038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 342aa MW: 38321.4 Da PI: 9.6543 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 390.1 | 3.3e-119 | 1 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg..yye...........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 mdd g+re r k+ +y+ p+ +s+k q+m+++aerda+i+ernla+sekk a+aerdmaflqrd+a+a Rmu_sc0003633.1_g000038.1 1 MDDGGHREngRLKAeqQYKaaqgqwlmqhqPHqPSMK-----QIMAIMAERDAAIQERNLAFSEKKTALAERDMAFLQRDAAIA 79 8999998888777766788887777765443334555.....****************************************** PP GAGA_bind 69 ernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeak 145 ern+a++erdn++++l+++ens+ s++p+g+q+++g k++++ qq +++ p++++ ++++re++++++lp+ +++a Rmu_sc0003633.1_g000038.1 80 ERNNAIIERDNAIATLQYRENSSLtsgnvSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYGTREMHTNDSLPLPPDPPTAP 163 *********************988899999********************55559********************999888776 PP GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlng 200 +++++k +pke+k+ ++kk++ks +kvk+es+d + sk+++k++dl+ln+ Rmu_sc0003633.1_g000038.1 164 KSRQTK------RPKEPKTVPPNKKPAKSPRKVKRESEDLNkmtfdrlhewkggqemcggaedlnkqlvvSKSDWKCQDLGLNQ 241 666555......67777777777777777777777777744477888999********************************** PP GAGA_bind 201 vslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284 v++D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvD Rmu_sc0003633.1_g000038.1 242 VAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSIYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVD 325 ************************************************************************************ PP GAGA_bind 285 LkdhWAkHGtnkfvtir 301 Lkd WAkHGtn+++ti+ Rmu_sc0003633.1_g000038.1 326 LKDNWAKHGTNRYITIK 342 ****************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence |
MDDGGHRENG RLKAEQQYKA AQGQWLMQHQ PHQPSMKQIM AIMAERDAAI QERNLAFSEK 60 KTALAERDMA FLQRDAAIAE RNNAIIERDN AIATLQYREN SSLTSGNVSS CPPGCQISRG 120 IKHMHNPQQH VHHLPHMNEA SYGTREMHTN DSLPLPPDPP TAPKSRQTKR PKEPKTVPPN 180 KKPAKSPRKV KRESEDLNKM TFDRLHEWKG GQEMCGGAED LNKQLVVSKS DWKCQDLGLN 240 QVAYDDSTMP APVCSCTGVL RQCYKWGNGG WQSSCCTTTM SIYPLPAVPN KRHARVGGRK 300 MSGSAFNKLI SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-144 | BBR-BPC family protein |