PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003633.1_g000037.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 342aa    MW: 38321.4 Da    PI: 9.6543
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003633.1_g000037.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind390.13.3e-11913421301
                  GAGA_bind   1 mdddgsre..rnkg..yye...........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 
                                mdd g+re  r k+  +y+           p+ +s+k     q+m+++aerda+i+ernla+sekk a+aerdmaflqrd+a+a
  Rmu_sc0003633.1_g000037.1   1 MDDGGHREngRLKAeqQYKaaqgqwlmqhqPHqPSMK-----QIMAIMAERDAAIQERNLAFSEKKTALAERDMAFLQRDAAIA 79 
                                8999998888777766788887777765443334555.....****************************************** PP

                  GAGA_bind  69 ernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeak 145
                                ern+a++erdn++++l+++ens+      s++p+g+q+++g k++++ qq +++ p++++ ++++re++++++lp+   +++a 
  Rmu_sc0003633.1_g000037.1  80 ERNNAIIERDNAIATLQYRENSSLtsgnvSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYGTREMHTNDSLPLPPDPPTAP 163
                                *********************988899999********************55559********************999888776 PP

                  GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlng 200
                                +++++k      +pke+k+  ++kk++ks +kvk+es+d +                             sk+++k++dl+ln+
  Rmu_sc0003633.1_g000037.1 164 KSRQTK------RPKEPKTVPPNKKPAKSPRKVKRESEDLNkmtfdrlhewkggqemcggaedlnkqlvvSKSDWKCQDLGLNQ 241
                                666555......67777777777777777777777777744477888999********************************** PP

                  GAGA_bind 201 vslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284
                                v++D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvD
  Rmu_sc0003633.1_g000037.1 242 VAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSIYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVD 325
                                ************************************************************************************ PP

                  GAGA_bind 285 LkdhWAkHGtnkfvtir 301
                                Lkd WAkHGtn+++ti+
  Rmu_sc0003633.1_g000037.1 326 LKDNWAKHGTNRYITIK 342
                                ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MDDGGHRENG RLKAEQQYKA AQGQWLMQHQ PHQPSMKQIM AIMAERDAAI QERNLAFSEK  60
KTALAERDMA FLQRDAAIAE RNNAIIERDN AIATLQYREN SSLTSGNVSS CPPGCQISRG  120
IKHMHNPQQH VHHLPHMNEA SYGTREMHTN DSLPLPPDPP TAPKSRQTKR PKEPKTVPPN  180
KKPAKSPRKV KRESEDLNKM TFDRLHEWKG GQEMCGGAED LNKQLVVSKS DWKCQDLGLN  240
QVAYDDSTMP APVCSCTGVL RQCYKWGNGG WQSSCCTTTM SIYPLPAVPN KRHARVGGRK  300
MSGSAFNKLI SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-144BBR-BPC family protein