PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003576.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 722aa MW: 83611.4 Da PI: 7.5605

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003576.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	3.9e-26	78	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fYn+YA+++GFsvrk k+++ +n + + +f+Cskeg++++++ + e++r r trtgCka+++ ++ ++ w+v+ ++ e Rmu_sc0003576.1_g000008.1 78 EFYNSYATRIGFSVRKGKKRRDAKN-VVRQINFMCSKEGFEQDSDPS-ETKRADRLDTRTGCKAMIRFTLA-EDMWRVSYFDAE 158 6***************9999555.5************9999.9******************.9******* PP FAR1 85 HnHela 90 HnHela Rmu_sc0003576.1_g000008.1 159 HNHELA 164 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MRDFLLIGHE GWLWMKRKVS VFRGEKETDE VHVIDVESDD ENNEGNNREV PSIVNRQGSF 60 DEDDLFGKMV CSEVKAYEFY NSYATRIGFS VRKGKKRRDA KNVVRQINFM CSKEGFEQDS 120 DPSETKRADR LDTRTGCKAM IRFTLAEDMW RVSYFDAEHN HELAKPEERP FLRLNRKMSE 180 AHKGVIKTMC DARKGTIKTY SYLAEEVGGS QNVGFTKRDC YNFVNNEKMA MFEAGDAQSL 240 INLFKRKETE DPMFFYSVQV DQENRMTKFF WRDGRSRLDY ECFGDVVVFD TTCRTNRYNM 300 ICAPFVGVNN QWKNVLFGCA FLLDETTASF NWLFETFLES MGNQPPKTIY IDQCQAMENG 360 IRDVFPDTCH CLCLWHISLN ATRHIASYLG IPDFKKMFNK CLYGCETVAE FHSTWDELLV 420 TFNVTENEWL KRLYTLREKW CAAFTLDIFS ARIQASQRSE STNNVFHHIS ATRMRLIEFV 480 HHYDKQVEAT RSSEIEETFR CTNGVPSTAK RSTKLLYHAG KVYTRKIYNL FGTELTASMA 540 FKMDEVDTNG TVHTFELSQE GRNRIYVVKL NSSDDTITCM GLLCRHALRV LNVRNVTKIP 600 PQYILKRWKK DAKSGIGAQE HEALLQQKDK PSVVLHRNNM VRKAYDILSK AAMTEKGSKI 660 AMQKLKEMEE LIEKDELESK GFDHKELYPS MSLSTINTQG CLPPPNQASC LCLILTFLCS 720 IV

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MRDFLLIGHE GWLWMKRKVS VFRGEKETDE VHVIDVESDD ENNEGNNREV PSIVNRQGSF  60
DEDDLFGKMV CSEVKAYEFY NSYATRIGFS VRKGKKRRDA KNVVRQINFM CSKEGFEQDS  120
DPSETKRADR LDTRTGCKAM IRFTLAEDMW RVSYFDAEHN HELAKPEERP FLRLNRKMSE  180
AHKGVIKTMC DARKGTIKTY SYLAEEVGGS QNVGFTKRDC YNFVNNEKMA MFEAGDAQSL  240
INLFKRKETE DPMFFYSVQV DQENRMTKFF WRDGRSRLDY ECFGDVVVFD TTCRTNRYNM  300
ICAPFVGVNN QWKNVLFGCA FLLDETTASF NWLFETFLES MGNQPPKTIY IDQCQAMENG  360
IRDVFPDTCH CLCLWHISLN ATRHIASYLG IPDFKKMFNK CLYGCETVAE FHSTWDELLV  420
TFNVTENEWL KRLYTLREKW CAAFTLDIFS ARIQASQRSE STNNVFHHIS ATRMRLIEFV  480
HHYDKQVEAT RSSEIEETFR CTNGVPSTAK RSTKLLYHAG KVYTRKIYNL FGTELTASMA  540
FKMDEVDTNG TVHTFELSQE GRNRIYVVKL NSSDDTITCM GLLCRHALRV LNVRNVTKIP  600
PQYILKRWKK DAKSGIGAQE HEALLQQKDK PSVVLHRNNM VRKAYDILSK AAMTEKGSKI  660
AMQKLKEMEE LIEKDELESK GFDHKELYPS MSLSTINTQG CLPPPNQASC LCLILTFLCS  720
IV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	99	RKGKKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein