PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003558.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 304aa    MW: 34907.8 Da    PI: 8.683
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003558.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.41e-2234118290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk.vkkekdgkwevtklele 84 
                                fYn+YAke+GFs+r ++s ++k+n+e +++++vC+k+g+++ e +k     r+r   ++gCka++  v+k+k+ ++ ++ +++ 
  Rmu_sc0003558.1_g000007.1  34 FYNRYAKEAGFSIRSHSSATNKDNTELMRKEYVCYKQGTSKVEGEK-----RKRGLPKVGCKARIAaVRKKKSRRYAISVFVEG 112
                                ***************************************9998877.....999**********97366666************ PP

                       FAR1  85 HnHela 90 
                                HnH+l+
  Rmu_sc0003558.1_g000007.1 113 HNHPLT 118
                                ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MESKDDHIYI PQVKAELMPI LHQEFETIDD VAAFYNRYAK EAGFSIRSHS SATNKDNTEL  60
MRKEYVCYKQ GTSKVEGEKR KRGLPKVGCK ARIAAVRKKK SRRYAISVFV EGHNHPLTSP  120
PRVHLLRSHR RVSKVNTVLS QQLSLVNVQK HTQFEFFGVQ AGGIVNIGCT QRDLYNYGRT  180
CCEAQKGHDG DLLYMHFQNE KEKDPSFVYT MESYEENRVT MCFWADSISR RAYSFYGDVT  240
IIFTCAFLND ETADSFVWLF KELLNAMPGN APENAPKMII TDKDPAMTKA ILEALPQTFH  300
RYCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100KRKRGLPKVGCKARIAAVRKKK
280101KRKRGLPKVGCKARIAAVRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-42FAR1 family protein